miRNA display CGI


Results 81 - 100 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 49151 0.66 0.768291
Target:  5'- -aGGCGCac-GGGUUCCAGGgucAGCCUg -3'
miRNA:   3'- ucUCGCGgauCCCGAGGUUC---UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 51572 0.7 0.533975
Target:  5'- uGGGCGCCgccgggaGGGGC-CCGggGGAGCCa- -3'
miRNA:   3'- uCUCGCGGa------UCCCGaGGU--UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 51831 0.69 0.572949
Target:  5'- cGGGGCGgCguggaggGGGGCUCgGGGccuGGCCCg -3'
miRNA:   3'- -UCUCGCgGa------UCCCGAGgUUC---UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 51899 0.71 0.477449
Target:  5'- gAGGcuGCGUCggcgGGGGcCUCCGAGgcaccgacgggcGGCCCCg -3'
miRNA:   3'- -UCU--CGCGGa---UCCC-GAGGUUC------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 52652 0.67 0.682107
Target:  5'- -uGGCGCaugAGGGCgUCCAGccucGCCCCc -3'
miRNA:   3'- ucUCGCGga-UCCCG-AGGUUcu--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 52846 0.77 0.193018
Target:  5'- cGAGcCGCCgccgcccccgcccgGGGGCUCCAGGuccgugguccucgcGGCCCCg -3'
miRNA:   3'- uCUC-GCGGa-------------UCCCGAGGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 53701 0.72 0.427488
Target:  5'- --cGCGCCUagcgGGGGCacguuccccguccucUCCGGGAGCCgCg -3'
miRNA:   3'- ucuCGCGGA----UCCCG---------------AGGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 53881 0.69 0.582806
Target:  5'- -cAGCGCCcccgUAGGGCguagcccaggUCCAGG-GCCCg -3'
miRNA:   3'- ucUCGCGG----AUCCCG----------AGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 54028 0.7 0.483898
Target:  5'- -uGGCGCCUccggAGGGCggCCAugucggcgguggucAGGGCCCa -3'
miRNA:   3'- ucUCGCGGA----UCCCGa-GGU--------------UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 54491 0.67 0.69195
Target:  5'- -uGGCGUCgugggAGGaGaCUCCccAGGGCCCCg -3'
miRNA:   3'- ucUCGCGGa----UCC-C-GAGGu-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 54613 0.71 0.471955
Target:  5'- gGGGGCGCCauccggccgccucucUGGuccgguGGCUCCccgggcauuggAGGGGCCCCg -3'
miRNA:   3'- -UCUCGCGG---------------AUC------CCGAGG-----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 55380 0.66 0.768291
Target:  5'- cGGGaCGCCcGGGGCaCCGAG-GCCa- -3'
miRNA:   3'- uCUC-GCGGaUCCCGaGGUUCuCGGgg -5'
28803 3' -60.1 NC_006146.1 + 55524 0.66 0.740291
Target:  5'- cGAGCgGCC-AGGGcCUCCA---GCUCCg -3'
miRNA:   3'- uCUCG-CGGaUCCC-GAGGUucuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 57381 0.66 0.759061
Target:  5'- -uGGCGCCgguGGGCU-----GGCCCCg -3'
miRNA:   3'- ucUCGCGGau-CCCGAgguucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 58235 0.66 0.740291
Target:  5'- gGGGGCGUggaCaAGGGCUauaaaAGGGGCCCg -3'
miRNA:   3'- -UCUCGCG---GaUCCCGAgg---UUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 60888 0.68 0.632464
Target:  5'- cAGAcCgGCCUGGGGCccaguggaUCCAGGAGCUg- -3'
miRNA:   3'- -UCUcG-CGGAUCCCG--------AGGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 61482 0.75 0.280958
Target:  5'- cGAGUGgcaggaucaCC-AGGGCUCCGAGgaGGCCCCu -3'
miRNA:   3'- uCUCGC---------GGaUCCCGAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 61824 0.69 0.572949
Target:  5'- aGGGGCGCUggugggggcagUGGGGCUggugCCGGGAcUCCCg -3'
miRNA:   3'- -UCUCGCGG-----------AUCCCGA----GGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 61922 0.73 0.336089
Target:  5'- cGGcGgGCCaucaGGGGCUCCAGG-GCCCUg -3'
miRNA:   3'- -UCuCgCGGa---UCCCGAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 62383 0.66 0.740291
Target:  5'- cGGGGCcucgGCCUGGGGUaagguuaucgacUCCG-GAaCCCCg -3'
miRNA:   3'- -UCUCG----CGGAUCCCG------------AGGUuCUcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.