miRNA display CGI


Results 121 - 140 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 85907 0.66 0.749725
Target:  5'- gAGAGaGCCgcGGGGCUUUAcccuGGGGCCUg -3'
miRNA:   3'- -UCUCgCGGa-UCCCGAGGU----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 88494 0.72 0.426624
Target:  5'- uGGAGCcaaugggGCCUGGGGCUguaucucccuguaacCCGgguguGGAGCCCg -3'
miRNA:   3'- -UCUCG-------CGGAUCCCGA---------------GGU-----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 88535 0.71 0.466493
Target:  5'- cAGAGUGCCagcgguguguuaGGGGCU-UAGGGGCCCUg -3'
miRNA:   3'- -UCUCGCGGa-----------UCCCGAgGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 90546 0.68 0.602614
Target:  5'- cGGAGCGgUggagcAGGGC-CCGGGAGaagaCCCg -3'
miRNA:   3'- -UCUCGCgGa----UCCCGaGGUUCUCg---GGG- -5'
28803 3' -60.1 NC_006146.1 + 90975 0.66 0.759061
Target:  5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3'
miRNA:   3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 91771 0.72 0.424038
Target:  5'- uGGGUGCCUGGGGUgCCGugcuGGCaCCCg -3'
miRNA:   3'- uCUCGCGGAUCCCGaGGUuc--UCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 92001 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92061 0.69 0.592696
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 92120 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92180 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92270 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 95455 0.74 0.321598
Target:  5'- gAGaAGgGCaggaaggGGGGCUCUGAGAGCUCCg -3'
miRNA:   3'- -UC-UCgCGga-----UCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 98313 0.73 0.374364
Target:  5'- cGAGUGCC-GGGGUUCUAaccccGGcaAGCCCCa -3'
miRNA:   3'- uCUCGCGGaUCCCGAGGU-----UC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 99114 0.66 0.720199
Target:  5'- --cGCGCCUgcccuccggccucAGGcGuCUCCAcaGGGGCUCCa -3'
miRNA:   3'- ucuCGCGGA-------------UCC-C-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 99914 0.71 0.459262
Target:  5'- cGGGCGCaagagcGGGCUCCGGGucGCaCCCc -3'
miRNA:   3'- uCUCGCGgau---CCCGAGGUUCu-CG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 100249 0.77 0.202102
Target:  5'- gGGGGCGUUcacgcacgGGGGCUCCAuGGAGCCUCc -3'
miRNA:   3'- -UCUCGCGGa-------UCCCGAGGU-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 102394 0.66 0.734587
Target:  5'- gGGAGCuggugguaucugucCCUGGGGCggCCAaAGAGCCa- -3'
miRNA:   3'- -UCUCGc-------------GGAUCCCGa-GGU-UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 102873 0.69 0.593687
Target:  5'- uGAGCGCCaagaagcagccgcagGGGGacgCCAGGGGCCg- -3'
miRNA:   3'- uCUCGCGGa--------------UCCCga-GGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 102990 0.66 0.730768
Target:  5'- uGAGCaCCUucGGCUCCcacGAGgCCCa -3'
miRNA:   3'- uCUCGcGGAucCCGAGGuu-CUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 104210 0.69 0.592696
Target:  5'- cGGGGCcgcaaGCCgAGGGUUCaggGAGGuGCCCCg -3'
miRNA:   3'- -UCUCG-----CGGaUCCCGAGg--UUCU-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.