miRNA display CGI


Results 141 - 160 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 104973 0.74 0.328784
Target:  5'- -aAG-GCCUGGGGCUCCcgaGGGGGCUCUg -3'
miRNA:   3'- ucUCgCGGAUCCCGAGG---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105692 0.76 0.250293
Target:  5'- uGGA-CGCCc-GGGCUCCcAGGGCCCCn -3'
miRNA:   3'- -UCUcGCGGauCCCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105717 1.11 0.000831
Target:  5'- cAGAGCGCCUAGGGCUCCAAGAGCCCCa -3'
miRNA:   3'- -UCUCGCGGAUCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105744 0.77 0.202102
Target:  5'- aAGAGCuCCaAGaGCUCCAAGAGCUCCa -3'
miRNA:   3'- -UCUCGcGGaUCcCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105780 0.69 0.582806
Target:  5'- aAGAGCaCC-AGGGCaCCcAGGGCuCCCa -3'
miRNA:   3'- -UCUCGcGGaUCCCGaGGuUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 107518 0.68 0.652375
Target:  5'- gGGGGCGuCCUcuGGUUUaaaCAuGAGCCCCa -3'
miRNA:   3'- -UCUCGC-GGAucCCGAG---GUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 107547 0.66 0.721163
Target:  5'- --cGUGCCcAGGGgUCCcAGGGCUUCg -3'
miRNA:   3'- ucuCGCGGaUCCCgAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 109400 0.76 0.244502
Target:  5'- cAGGGCGgCaGGGGcCUCCucGGAGCCCUg -3'
miRNA:   3'- -UCUCGCgGaUCCC-GAGGu-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 110009 0.68 0.652375
Target:  5'- -uGGgGCCUcAGGGCUCCGuccugaucaaAGAugGCCUCg -3'
miRNA:   3'- ucUCgCGGA-UCCCGAGGU----------UCU--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 111153 0.67 0.682107
Target:  5'- aGGuAGCGCCgcuucAGGcGCUCgGGGAggcgagagaugcGCCCCc -3'
miRNA:   3'- -UC-UCGCGGa----UCC-CGAGgUUCU------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 111365 0.66 0.749725
Target:  5'- cAGGGCGacaaaCUGGGaaUUgAAGAGCCCg -3'
miRNA:   3'- -UCUCGCg----GAUCCcgAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 112347 0.7 0.533975
Target:  5'- --uGUGCC-AGGGCUCCAuguaGGCCgCCa -3'
miRNA:   3'- ucuCGCGGaUCCCGAGGUuc--UCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 113974 0.74 0.300748
Target:  5'- gGGGGUGCCcgGGGGCUCCGcguuguugaaGGAGCUg- -3'
miRNA:   3'- -UCUCGCGGa-UCCCGAGGU----------UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 114078 0.71 0.441451
Target:  5'- cAGAGgcCGCCUcGGGggCCAGaAGCCCCg -3'
miRNA:   3'- -UCUC--GCGGAuCCCgaGGUUcUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 116666 0.66 0.768291
Target:  5'- cGGGGcCGCCcAGaGGCUCUgcucccGCCCCa -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGAGGuucu--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 116810 0.67 0.662311
Target:  5'- gGGAGCaGgUUAGGG-UCCAAGAGCgCg -3'
miRNA:   3'- -UCUCG-CgGAUCCCgAGGUUCUCGgGg -5'
28803 3' -60.1 NC_006146.1 + 117248 0.77 0.212063
Target:  5'- aAGAGCGUCUGucGGGCgCUGAcuGAGCCCCg -3'
miRNA:   3'- -UCUCGCGGAU--CCCGaGGUU--CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 117542 0.69 0.543639
Target:  5'- -aAGCGCC--GGGCcagCCAAGAccucacgccGCCCCg -3'
miRNA:   3'- ucUCGCGGauCCCGa--GGUUCU---------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 118636 0.66 0.740291
Target:  5'- gGGGGCGCCcGGGGC-CCAGuacacGuGCgUCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCGaGGUU-----CuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 119315 0.66 0.721163
Target:  5'- -uGGCcCCUcuGGCUCCcccGGGCCCCu -3'
miRNA:   3'- ucUCGcGGAucCCGAGGuu-CUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.