Results 161 - 180 of 325 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 119728 | 0.67 | 0.69195 |
Target: 5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3' miRNA: 3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 121390 | 0.67 | 0.710515 |
Target: 5'- --cGCGCCUcGGGCcucaacgUCCGGGAGagucugCCCa -3' miRNA: 3'- ucuCGCGGAuCCCG-------AGGUUCUCg-----GGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 122610 | 0.68 | 0.612553 |
Target: 5'- uGGAGgGCgaGGGGCggaggaggCCGGG-GCCCUc -3' miRNA: 3'- -UCUCgCGgaUCCCGa-------GGUUCuCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 123051 | 0.69 | 0.563131 |
Target: 5'- cGGGCGCUggaggagAGGGUcCuCGAGAGCCgCg -3' miRNA: 3'- uCUCGCGGa------UCCCGaG-GUUCUCGGgG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 123145 | 0.68 | 0.652375 |
Target: 5'- uGGAGgccguacuCGCC-AGGGCgcgCgAGGAGgCCCCg -3' miRNA: 3'- -UCUC--------GCGGaUCCCGa--GgUUCUC-GGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 123327 | 0.67 | 0.711487 |
Target: 5'- cGGGaCGUCUgcGGGGCcgUCAGGGGUCUCg -3' miRNA: 3'- uCUC-GCGGA--UCCCGa-GGUUCUCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 123362 | 0.72 | 0.398706 |
Target: 5'- gGGAGC-UCUGGcGCUggCCGGGGGCCCCg -3' miRNA: 3'- -UCUCGcGGAUCcCGA--GGUUCUCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 123570 | 0.72 | 0.398706 |
Target: 5'- -cGGCGCCUGGcccGGCuggaggccaucaUCCAGGAGgCCCg -3' miRNA: 3'- ucUCGCGGAUC---CCG------------AGGUUCUCgGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 124402 | 0.7 | 0.486674 |
Target: 5'- cAGAGUGCCUccGGGCUCa---AGCCCg -3' miRNA: 3'- -UCUCGCGGAu-CCCGAGguucUCGGGg -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 124749 | 0.66 | 0.749725 |
Target: 5'- cGAGUuCCUGGGGCuggUCCAcaaucAGAGCacggccagggCCCg -3' miRNA: 3'- uCUCGcGGAUCCCG---AGGU-----UCUCG----------GGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 124937 | 0.67 | 0.659333 |
Target: 5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3' miRNA: 3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 125357 | 0.7 | 0.502548 |
Target: 5'- cGGAG-GCC-AGGGCggCCAAGcccaaggaggcccaGGCCCCc -3' miRNA: 3'- -UCUCgCGGaUCCCGa-GGUUC--------------UCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 126181 | 0.66 | 0.749725 |
Target: 5'- aGGGGgGCCaguGGGCaggcaCCugauAGAGUCCCu -3' miRNA: 3'- -UCUCgCGGau-CCCGa----GGu---UCUCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 126478 | 0.67 | 0.711487 |
Target: 5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3' miRNA: 3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 127231 | 0.66 | 0.730768 |
Target: 5'- cGGAGgGCCUGGaGCgaaugCGAGccgGGCCCCu -3' miRNA: 3'- -UCUCgCGGAUCcCGag---GUUC---UCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 128206 | 0.74 | 0.30758 |
Target: 5'- cGGGCGCUggGGGGCUCUGccAGCCUCa -3' miRNA: 3'- uCUCGCGGa-UCCCGAGGUucUCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 129129 | 0.69 | 0.582806 |
Target: 5'- cGGGCGCCcgggcgcAGGGcCUCCGgcgGGAaGCCCa -3' miRNA: 3'- uCUCGCGGa------UCCC-GAGGU---UCU-CGGGg -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 130044 | 0.67 | 0.662311 |
Target: 5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3' miRNA: 3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 131125 | 0.67 | 0.682107 |
Target: 5'- gGGAGCuCC--GGGC-CCAAGccugacuccaAGCCCCa -3' miRNA: 3'- -UCUCGcGGauCCCGaGGUUC----------UCGGGG- -5' |
|||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 131214 | 0.71 | 0.477449 |
Target: 5'- cGGAGCGgCgcugcaGGC-CCAGGAGCCCg -3' miRNA: 3'- -UCUCGCgGauc---CCGaGGUUCUCGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home