miRNA display CGI


Results 61 - 80 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 151988 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151693 0.71 0.477449
Target:  5'- -cGGCGCCuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- ucUCGCGG-AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151594 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 151452 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 151139 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 150919 0.66 0.768291
Target:  5'- -cGGCGUCgUGGGGcCUCCugaccucgcAGAcGCCCCc -3'
miRNA:   3'- ucUCGCGG-AUCCC-GAGGu--------UCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 150685 0.68 0.642424
Target:  5'- gGGAGUgGCCaGGGGgaCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG-CGGaUCCCgaGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 150559 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 149953 0.66 0.767373
Target:  5'- aGGGGCGCCcaggcguugggagUGGGGg-CCAGG-GCCUg -3'
miRNA:   3'- -UCUCGCGG-------------AUCCCgaGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 149852 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 149596 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 149321 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 149196 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 148910 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148610 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148516 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148374 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148131 0.75 0.256197
Target:  5'- uGGAGUGCCgcauGGGCUUCGugcuggucAGGGCCCg -3'
miRNA:   3'- -UCUCGCGGau--CCCGAGGU--------UCUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.