miRNA display CGI


Results 81 - 100 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 148061 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 147481 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 147104 0.78 0.174628
Target:  5'- uGGGCGagCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- uCUCGCg-GAUCCCGAGguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 146774 0.74 0.294034
Target:  5'- cAGAGUuagaaguuagGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG----------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 146518 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 146243 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 146183 0.69 0.55336
Target:  5'- cGAGCGCCUGGacgcuaguGCUgCAuGGGCUCCu -3'
miRNA:   3'- uCUCGCGGAUCc-------CGAgGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 146118 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 145832 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145532 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145438 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145296 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 145220 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 144983 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 144403 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 144396 0.69 0.563131
Target:  5'- uGGGUGUgUGGGGUcCCAGGcaAGCCCa -3'
miRNA:   3'- uCUCGCGgAUCCCGaGGUUC--UCGGGg -5'
28803 3' -60.1 NC_006146.1 + 143697 0.75 0.287438
Target:  5'- cAGAGUuagaaguuaGCCUGGGGcCUCgGAGGGCCUg -3'
miRNA:   3'- -UCUCG---------CGGAUCCC-GAGgUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 143440 0.68 0.622505
Target:  5'- --uGCGCCUucucaGGaGGuCUCCGaaGGGGCCCUg -3'
miRNA:   3'- ucuCGCGGA-----UC-CC-GAGGU--UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 143165 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 143040 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.