miRNA display CGI


Results 101 - 120 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 142754 0.68 0.602614
Target:  5'- -uGGCGCCcgccGGCUCCAAccucGGGCCUCu -3'
miRNA:   3'- ucUCGCGGauc-CCGAGGUU----CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142454 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142360 0.67 0.710515
Target:  5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3'
miRNA:   3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142218 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 142142 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 141905 0.71 0.453878
Target:  5'- uGGGCGUCUcugggucuggacuggAGGGCcCUggGAgGCCCCu -3'
miRNA:   3'- uCUCGCGGA---------------UCCCGaGGuuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 141899 0.67 0.672224
Target:  5'- aGGAGCGCCgcu-GUUCCAGGA-CCCg -3'
miRNA:   3'- -UCUCGCGGauccCGAGGUUCUcGGGg -5'
28803 3' -60.1 NC_006146.1 + 141325 0.69 0.55336
Target:  5'- cAGGGgGCaaagGGGGCUCaGAGGGCaCCUa -3'
miRNA:   3'- -UCUCgCGga--UCCCGAGgUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 139131 0.68 0.642424
Target:  5'- gGGGGCuguggGCCgaacgGGGGCUCCcgucccccggGGGGGCgCCu -3'
miRNA:   3'- -UCUCG-----CGGa----UCCCGAGG----------UUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 137911 0.71 0.459262
Target:  5'- -cAGgGCCgGGGGUUCCGGGGGCagCCg -3'
miRNA:   3'- ucUCgCGGaUCCCGAGGUUCUCGg-GG- -5'
28803 3' -60.1 NC_006146.1 + 137845 0.66 0.721163
Target:  5'- aGGGGgGCUcGGGGUgggugggcgugUCCc-GGGCCCCg -3'
miRNA:   3'- -UCUCgCGGaUCCCG-----------AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137720 0.67 0.69195
Target:  5'- cGGGGUGCCc-GGGCcuacCCGguucuGGAGCUCCu -3'
miRNA:   3'- -UCUCGCGGauCCCGa---GGU-----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137592 0.68 0.612553
Target:  5'- uGGAGCucggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137499 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.7 0.533975
Target:  5'- gAGGGUG-CUGGGGUcCCGGGGaccacGCCCCu -3'
miRNA:   3'- -UCUCGCgGAUCCCGaGGUUCU-----CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137313 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137236 0.7 0.514837
Target:  5'- uGGGgGCCUGGGGUcCCGGGGaccacaCCCCu -3'
miRNA:   3'- uCUCgCGGAUCCCGaGGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 137220 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137127 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.