miRNA display CGI


Results 141 - 160 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 135455 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135362 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135269 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135176 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 131493 0.66 0.740291
Target:  5'- uGGGGUGCC-AGGGaucgaCCGggaaAGGGCCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCga---GGU----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 131214 0.71 0.477449
Target:  5'- cGGAGCGgCgcugcaGGC-CCAGGAGCCCg -3'
miRNA:   3'- -UCUCGCgGauc---CCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 131125 0.67 0.682107
Target:  5'- gGGAGCuCC--GGGC-CCAAGccugacuccaAGCCCCa -3'
miRNA:   3'- -UCUCGcGGauCCCGaGGUUC----------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 130044 0.67 0.662311
Target:  5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3'
miRNA:   3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 129129 0.69 0.582806
Target:  5'- cGGGCGCCcgggcgcAGGGcCUCCGgcgGGAaGCCCa -3'
miRNA:   3'- uCUCGCGGa------UCCC-GAGGU---UCU-CGGGg -5'
28803 3' -60.1 NC_006146.1 + 128206 0.74 0.30758
Target:  5'- cGGGCGCUggGGGGCUCUGccAGCCUCa -3'
miRNA:   3'- uCUCGCGGa-UCCCGAGGUucUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 127231 0.66 0.730768
Target:  5'- cGGAGgGCCUGGaGCgaaugCGAGccgGGCCCCu -3'
miRNA:   3'- -UCUCgCGGAUCcCGag---GUUC---UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 126478 0.67 0.711487
Target:  5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3'
miRNA:   3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 126181 0.66 0.749725
Target:  5'- aGGGGgGCCaguGGGCaggcaCCugauAGAGUCCCu -3'
miRNA:   3'- -UCUCgCGGau-CCCGa----GGu---UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 125357 0.7 0.502548
Target:  5'- cGGAG-GCC-AGGGCggCCAAGcccaaggaggcccaGGCCCCc -3'
miRNA:   3'- -UCUCgCGGaUCCCGa-GGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 124937 0.67 0.659333
Target:  5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3'
miRNA:   3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 124749 0.66 0.749725
Target:  5'- cGAGUuCCUGGGGCuggUCCAcaaucAGAGCacggccagggCCCg -3'
miRNA:   3'- uCUCGcGGAUCCCG---AGGU-----UCUCG----------GGG- -5'
28803 3' -60.1 NC_006146.1 + 124402 0.7 0.486674
Target:  5'- cAGAGUGCCUccGGGCUCa---AGCCCg -3'
miRNA:   3'- -UCUCGCGGAu-CCCGAGguucUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 123570 0.72 0.398706
Target:  5'- -cGGCGCCUGGcccGGCuggaggccaucaUCCAGGAGgCCCg -3'
miRNA:   3'- ucUCGCGGAUC---CCG------------AGGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 123362 0.72 0.398706
Target:  5'- gGGAGC-UCUGGcGCUggCCGGGGGCCCCg -3'
miRNA:   3'- -UCUCGcGGAUCcCGA--GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 123327 0.67 0.711487
Target:  5'- cGGGaCGUCUgcGGGGCcgUCAGGGGUCUCg -3'
miRNA:   3'- uCUC-GCGGA--UCCCGa-GGUUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.