miRNA display CGI


Results 81 - 100 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 168622 0.69 0.563131
Target:  5'- aGGGGCGagcggGGGGCUUCcccGGGGCCCg -3'
miRNA:   3'- -UCUCGCgga--UCCCGAGGu--UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 15533 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 24767 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 129129 0.69 0.582806
Target:  5'- cGGGCGCCcgggcgcAGGGcCUCCGgcgGGAaGCCCa -3'
miRNA:   3'- uCUCGCGGa------UCCC-GAGGU---UCU-CGGGg -5'
28803 3' -60.1 NC_006146.1 + 9466 0.69 0.592696
Target:  5'- --cGCGCCUuGGGUUCCcgcGGGGCCa- -3'
miRNA:   3'- ucuCGCGGAuCCCGAGGu--UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 163215 0.68 0.621509
Target:  5'- aGGAGCcgggcagGCCgUAGGcaggguagcgcuGCUCCAGGAaCCCCg -3'
miRNA:   3'- -UCUCG-------CGG-AUCC------------CGAGGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 60888 0.68 0.632464
Target:  5'- cAGAcCgGCCUGGGGCccaguggaUCCAGGAGCUg- -3'
miRNA:   3'- -UCUcG-CGGAUCCCG--------AGGUUCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 137911 0.71 0.459262
Target:  5'- -cAGgGCCgGGGGUUCCGGGGGCagCCg -3'
miRNA:   3'- ucUCgCGGaUCCCGAGGUUCUCGg-GG- -5'
28803 3' -60.1 NC_006146.1 + 45685 0.71 0.441451
Target:  5'- gGGAGCGga-AGGGCUCUGAGcGCCCg -3'
miRNA:   3'- -UCUCGCggaUCCCGAGGUUCuCGGGg -5'
28803 3' -60.1 NC_006146.1 + 48625 0.72 0.407042
Target:  5'- cGGGUGCCgugggggcGGGCUCCGGGcggguGCCCa -3'
miRNA:   3'- uCUCGCGGau------CCCGAGGUUCu----CGGGg -5'
28803 3' -60.1 NC_006146.1 + 135641 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136105 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136384 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136755 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137034 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 16445 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25679 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148131 0.75 0.256197
Target:  5'- uGGAGUGCCgcauGGGCUUCGugcuggucAGGGCCCg -3'
miRNA:   3'- -UCUCGCGGau--CCCGAGGU--------UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 95455 0.74 0.321598
Target:  5'- gAGaAGgGCaggaaggGGGGCUCUGAGAGCUCCg -3'
miRNA:   3'- -UC-UCgCGga-----UCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169232 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.