miRNA display CGI


Results 121 - 140 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 170163 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 155575 0.72 0.415487
Target:  5'- cGGGGCGCCcgccaGGGGCacaCCGGGgcuggccuccGGCCCCu -3'
miRNA:   3'- -UCUCGCGGa----UCCCGa--GGUUC----------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170668 0.68 0.652375
Target:  5'- -cGGCGCg-GGGGaggCCAGGGGCgCCCc -3'
miRNA:   3'- ucUCGCGgaUCCCga-GGUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 137220 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136941 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 62995 0.7 0.495984
Target:  5'- -uGGC-CCU-GGGCUCCGGGAGUCUg -3'
miRNA:   3'- ucUCGcGGAuCCCGAGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 156252 0.7 0.524373
Target:  5'- cGGGGUGCCgugguuGGGCagcaCCAuGAGCUCCc -3'
miRNA:   3'- -UCUCGCGGau----CCCGa---GGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 146183 0.69 0.55336
Target:  5'- cGAGCGCCUGGacgcuaguGCUgCAuGGGCUCCu -3'
miRNA:   3'- uCUCGCGGAUCc-------CGAgGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 12454 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 21689 0.69 0.572949
Target:  5'- -aGGCGCC-GGGGCcuUUCAGGcccucgGGCCCCu -3'
miRNA:   3'- ucUCGCGGaUCCCG--AGGUUC------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42685 0.69 0.582806
Target:  5'- uGGGCuGCCUGaGGCUggcAGAGCCCCc -3'
miRNA:   3'- uCUCG-CGGAUcCCGAgguUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167654 0.69 0.582806
Target:  5'- --cGUGCCgGGGGC-CCGGGGGCguguCCCg -3'
miRNA:   3'- ucuCGCGGaUCCCGaGGUUCUCG----GGG- -5'
28803 3' -60.1 NC_006146.1 + 90546 0.68 0.602614
Target:  5'- cGGAGCGgUggagcAGGGC-CCGGGAGaagaCCCg -3'
miRNA:   3'- -UCUCGCgGa----UCCCGaGGUUCUCg---GGG- -5'
28803 3' -60.1 NC_006146.1 + 163215 0.68 0.621509
Target:  5'- aGGAGCcgggcagGCCgUAGGcaggguagcgcuGCUCCAGGAaCCCCg -3'
miRNA:   3'- -UCUCG-------CGG-AUCC------------CGAGGUUCUcGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48981 0.68 0.636448
Target:  5'- uGAGCGUCUGGGagaGCUgauucugcagaccggCUAGGAGCCgCa -3'
miRNA:   3'- uCUCGCGGAUCC---CGA---------------GGUUCUCGGgG- -5'
28803 3' -60.1 NC_006146.1 + 110009 0.68 0.652375
Target:  5'- -uGGgGCCUcAGGGCUCCGuccugaucaaAGAugGCCUCg -3'
miRNA:   3'- ucUCgCGGA-UCCCGAGGU----------UCU--CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135548 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135826 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136198 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136477 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.