miRNA display CGI


Results 141 - 160 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 85907 0.66 0.749725
Target:  5'- gAGAGaGCCgcGGGGCUUUAcccuGGGGCCUg -3'
miRNA:   3'- -UCUCgCGGa-UCCCGAGGU----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 37878 0.66 0.740291
Target:  5'- uAGAGCagGCC--GGGCUggGAGAGUCCUg -3'
miRNA:   3'- -UCUCG--CGGauCCCGAggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 72564 0.67 0.662311
Target:  5'- uGGGCGCCggcguggugcUGGGGCUugCCGGGGuuagaaCCCCg -3'
miRNA:   3'- uCUCGCGG----------AUCCCGA--GGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 137406 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136755 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136477 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136105 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135826 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 135362 0.68 0.652375
Target:  5'- uGGAGCucgggGCC-GGGGg-CCGGGuGCCCCu -3'
miRNA:   3'- -UCUCG-----CGGaUCCCgaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 107518 0.68 0.652375
Target:  5'- gGGGGCGuCCUcuGGUUUaaaCAuGAGCCCCa -3'
miRNA:   3'- -UCUCGC-GGAucCCGAG---GUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13410 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22644 0.67 0.672224
Target:  5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3'
miRNA:   3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169267 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167881 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 41602 0.66 0.730768
Target:  5'- gAGAG-GCCcggGGGGCUgguccgcugggcCCGGGcgcagaccAGCCCCa -3'
miRNA:   3'- -UCUCgCGGa--UCCCGA------------GGUUC--------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 2381 0.66 0.721163
Target:  5'- -aGGCGuCCgcGGGCUUCcaGAGGGCUCUg -3'
miRNA:   3'- ucUCGC-GGauCCCGAGG--UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 63251 0.67 0.701746
Target:  5'- uGGGGCaaugGCCUccggGGGGCUCUAccuGGGCCauuCCa -3'
miRNA:   3'- -UCUCG----CGGA----UCCCGAGGUu--CUCGG---GG- -5'
28803 3' -60.1 NC_006146.1 + 54491 0.67 0.69195
Target:  5'- -uGGCGUCgugggAGGaGaCUCCccAGGGCCCCg -3'
miRNA:   3'- ucUCGCGGa----UCC-C-GAGGu-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 170405 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167610 0.67 0.682107
Target:  5'- uGGGgGCCUcgGGGGCggagggGGGGGUCCCg -3'
miRNA:   3'- uCUCgCGGA--UCCCGagg---UUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.