miRNA display CGI


Results 161 - 180 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 33306 0.7 0.50443
Target:  5'- --uGCGCCgccgcucgguccUGGGGCUCCGGGGuccggguGCUCCg -3'
miRNA:   3'- ucuCGCGG------------AUCCCGAGGUUCU-------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 102990 0.66 0.730768
Target:  5'- uGAGCaCCUucGGCUCCcacGAGgCCCa -3'
miRNA:   3'- uCUCGcGGAucCCGAGGuu-CUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 33223 0.71 0.477449
Target:  5'- gGGAGCcgggauggGgCUGGGGUUCCGggggugGGGGCUCCa -3'
miRNA:   3'- -UCUCG--------CgGAUCCCGAGGU------UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 81647 0.67 0.69195
Target:  5'- cGGGaCG-UUGGGGCUCgGAGGGUgCCg -3'
miRNA:   3'- uCUC-GCgGAUCCCGAGgUUCUCGgGG- -5'
28803 3' -60.1 NC_006146.1 + 31750 0.71 0.459262
Target:  5'- -aGGCGCCcccccgGGGGa--CGGGAGCCCCc -3'
miRNA:   3'- ucUCGCGGa-----UCCCgagGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 42821 0.71 0.477449
Target:  5'- cAGAGCGUgUagaccaggaucAGGGCcUCGAGGGCCgCCa -3'
miRNA:   3'- -UCUCGCGgA-----------UCCCGaGGUUCUCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 151693 0.71 0.477449
Target:  5'- -cGGCGCCuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- ucUCGCGG-AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 125357 0.7 0.502548
Target:  5'- cGGAG-GCC-AGGGCggCCAAGcccaaggaggcccaGGCCCCc -3'
miRNA:   3'- -UCUCgCGGaUCCCGa-GGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 63367 0.7 0.514837
Target:  5'- cAGGGCccuCCUGGGGCUcauguuuaaaCCAgaGGAcGCCCCc -3'
miRNA:   3'- -UCUCGc--GGAUCCCGA----------GGU--UCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137236 0.7 0.514837
Target:  5'- uGGGgGCCUGGGGUcCCGGGGaccacaCCCCu -3'
miRNA:   3'- uCUCgCGGAUCCCGaGGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 161771 0.7 0.514837
Target:  5'- gGGGGCGCCU-GGGCg---GGGGCCUg -3'
miRNA:   3'- -UCUCGCGGAuCCCGagguUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 42695 0.7 0.495984
Target:  5'- aAGAGCGUCUGGcccGGCgCCGcGGcGCCCCc -3'
miRNA:   3'- -UCUCGCGGAUC---CCGaGGUuCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 1332 0.7 0.524373
Target:  5'- cGAcGCGCgCUcGGGCcCCGGGgaAGCCCCc -3'
miRNA:   3'- uCU-CGCG-GAuCCCGaGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 2264 0.7 0.524373
Target:  5'- cGAcGCGCgCUcGGGCcCCGGGgaAGCCCCc -3'
miRNA:   3'- uCU-CGCG-GAuCCCGaGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 119728 0.67 0.69195
Target:  5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3'
miRNA:   3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 170048 0.68 0.642424
Target:  5'- uAGaAGCGCU----GCUCCuAGGGCCCCu -3'
miRNA:   3'- -UC-UCGCGGauccCGAGGuUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157532 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 154454 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 151376 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5'
28803 3' -60.1 NC_006146.1 + 148298 0.68 0.632464
Target:  5'- aGGGGC-CCU-GGGCcCCGAGGGCggcucCCCu -3'
miRNA:   3'- -UCUCGcGGAuCCCGaGGUUCUCG-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.