miRNA display CGI


Results 121 - 140 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 92120 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 92001 0.68 0.632464
Target:  5'- cGGGCccgGCCUGGGGCUgCUgcugGGGGGCgggCCCg -3'
miRNA:   3'- uCUCG---CGGAUCCCGA-GG----UUCUCG---GGG- -5'
28803 3' -60.1 NC_006146.1 + 124937 0.67 0.659333
Target:  5'- aGGAGCuGCCccGGGCagagagcgucgaggUCCccaGAGAGaCCCCg -3'
miRNA:   3'- -UCUCG-CGGauCCCG--------------AGG---UUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 28780 0.67 0.662311
Target:  5'- gGGAGCauacccugggGCCgAGGGCUCacuuGGGGCagCCCa -3'
miRNA:   3'- -UCUCG----------CGGaUCCCGAGgu--UCUCG--GGG- -5'
28803 3' -60.1 NC_006146.1 + 168344 0.67 0.662311
Target:  5'- cAGAGCcUCaguGGGCUgaagaaCCAGGuGCCCCg -3'
miRNA:   3'- -UCUCGcGGau-CCCGA------GGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 143040 0.67 0.682107
Target:  5'- cGGAGU-CCagaGGGGC-CCGAGGGCCUg -3'
miRNA:   3'- -UCUCGcGGa--UCCCGaGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 157843 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 154765 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 148610 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 145532 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 142454 0.67 0.682107
Target:  5'- gAGGGCgGCCgccuUGGGGC-CCG-GAGUCUCg -3'
miRNA:   3'- -UCUCG-CGG----AUCCCGaGGUuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 111153 0.67 0.682107
Target:  5'- aGGuAGCGCCgcuucAGGcGCUCgGGGAggcgagagaugcGCCCCc -3'
miRNA:   3'- -UC-UCGCGGa----UCC-CGAGgUUCU------------CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 157608 0.68 0.622505
Target:  5'- aGGAGgaCGCCUGGaGGCggacCCGAGGGgCUCu -3'
miRNA:   3'- -UCUC--GCGGAUC-CCGa---GGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 158556 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 155477 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 152399 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 149321 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 146243 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 143165 0.67 0.672224
Target:  5'- cGGAGgGCCUGaGGC-CCAGGGGCg-- -3'
miRNA:   3'- -UCUCgCGGAUcCCGaGGUUCUCGggg -5'
28803 3' -60.1 NC_006146.1 + 45322 0.67 0.672224
Target:  5'- aAGAGUGCCUGcGGGUUCCcauuGUcaCCCa -3'
miRNA:   3'- -UCUCGCGGAU-CCCGAGGuucuCG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.