miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 105717 1.11 0.000831
Target:  5'- cAGAGCGCCUAGGGCUCCAAGAGCCCCa -3'
miRNA:   3'- -UCUCGCGGAUCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 65192 0.83 0.079565
Target:  5'- uGGAGC-CCUAGGcGCUCUggGGGCCCUg -3'
miRNA:   3'- -UCUCGcGGAUCC-CGAGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 23790 0.79 0.154326
Target:  5'- --cGCGUCUGGGGC-CCGcuGAGCCCCa -3'
miRNA:   3'- ucuCGCGGAUCCCGaGGUu-CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 136740 0.78 0.169131
Target:  5'- gGGGGCGCaccccccacccucgCcGGGGCUCCGGGAGgCCCg -3'
miRNA:   3'- -UCUCGCG--------------GaUCCCGAGGUUCUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 147104 0.78 0.174628
Target:  5'- uGGGCGagCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- uCUCGCg-GAUCCCGAGguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 52846 0.77 0.193018
Target:  5'- cGAGcCGCCgccgcccccgcccgGGGGCUCCAGGuccgugguccucgcGGCCCCg -3'
miRNA:   3'- uCUC-GCGGa-------------UCCCGAGGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 105744 0.77 0.202102
Target:  5'- aAGAGCuCCaAGaGCUCCAAGAGCUCCa -3'
miRNA:   3'- -UCUCGcGGaUCcCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 100249 0.77 0.202102
Target:  5'- gGGGGCGUUcacgcacgGGGGCUCCAuGGAGCCUCc -3'
miRNA:   3'- -UCUCGCGGa-------UCCCGAGGU-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 6440 0.77 0.207031
Target:  5'- uGGGC-CCUGGGG-UCCAuGGGGCCCCa -3'
miRNA:   3'- uCUCGcGGAUCCCgAGGU-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 16445 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25679 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28757 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22601 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 137049 0.77 0.212063
Target:  5'- uGGGgGCCUGGGGUUCCGGGGaccacaCCCCu -3'
miRNA:   3'- uCUCgCGGAUCCCGAGGUUCUc-----GGGG- -5'
28803 3' -60.1 NC_006146.1 + 19523 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 117248 0.77 0.212063
Target:  5'- aAGAGCGUCUGucGGGCgCUGAcuGAGCCCCg -3'
miRNA:   3'- -UCUCGCGGAU--CCCGaGGUU--CUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13367 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 404 0.76 0.227794
Target:  5'- --cGCGCgCUGGGGgUCCGGGgaAGCCCCc -3'
miRNA:   3'- ucuCGCG-GAUCCCgAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48241 0.76 0.238823
Target:  5'- uGAGCGCCgcgcggAGGGCccccgccgccgUCCuggcgcgaaaGAGGGCCCCg -3'
miRNA:   3'- uCUCGCGGa-----UCCCG-----------AGG----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 109400 0.76 0.244502
Target:  5'- cAGGGCGgCaGGGGcCUCCucGGAGCCCUg -3'
miRNA:   3'- -UCUCGCgGaUCCC-GAGGu-UCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.