miRNA display CGI


Results 1 - 20 of 325 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 65192 0.83 0.079565
Target:  5'- uGGAGC-CCUAGGcGCUCUggGGGCCCUg -3'
miRNA:   3'- -UCUCGcGGAUCC-CGAGGuuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44411 0.73 0.35029
Target:  5'- -cGGCGCCUuccucgaGGGGCUCCcGGGGUCUg -3'
miRNA:   3'- ucUCGCGGA-------UCCCGAGGuUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 168300 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 150919 0.66 0.768291
Target:  5'- -cGGCGUCgUGGGGcCUCCugaccucgcAGAcGCCCCc -3'
miRNA:   3'- ucUCGCGG-AUCCC-GAGGu--------UCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 13367 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 16445 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 22601 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 25679 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41041 0.76 0.244502
Target:  5'- aGGAGgGCCUAGGacaGCuUCCGAGGGCUCg -3'
miRNA:   3'- -UCUCgCGGAUCC---CG-AGGUUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 104973 0.74 0.328784
Target:  5'- -aAG-GCCUGGGGCUCCcgaGGGGGCUCUg -3'
miRNA:   3'- ucUCgCGGAUCCCGAGG---UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44017 0.75 0.280958
Target:  5'- --cGCGgCggggagGGGGCggCCGAGGGCCCCg -3'
miRNA:   3'- ucuCGCgGa-----UCCCGa-GGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 48241 0.76 0.238823
Target:  5'- uGAGCGCCgcgcggAGGGCccccgccgccgUCCuggcgcgaaaGAGGGCCCCg -3'
miRNA:   3'- uCUCGCGGa-----UCCCG-----------AGG----------UUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 147104 0.78 0.174628
Target:  5'- uGGGCGagCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- uCUCGCg-GAUCCCGAGguuCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 61482 0.75 0.280958
Target:  5'- cGAGUGgcaggaucaCC-AGGGCUCCGAGgaGGCCCCu -3'
miRNA:   3'- uCUCGC---------GGaUCCCGAGGUUC--UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 52846 0.77 0.193018
Target:  5'- cGAGcCGCCgccgcccccgcccgGGGGCUCCAGGuccgugguccucgcGGCCCCg -3'
miRNA:   3'- uCUC-GCGGa-------------UCCCGAGGUUC--------------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 28757 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 95455 0.74 0.321598
Target:  5'- gAGaAGgGCaggaaggGGGGCUCUGAGAGCUCCg -3'
miRNA:   3'- -UC-UCgCGga-----UCCCGAGGUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167368 0.73 0.366477
Target:  5'- -cGGCGCCggccgGGGGCUgaGGGGGCuCCCg -3'
miRNA:   3'- ucUCGCGGa----UCCCGAggUUCUCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 100249 0.77 0.202102
Target:  5'- gGGGGCGUUcacgcacgGGGGCUCCAuGGAGCCUCc -3'
miRNA:   3'- -UCUCGCGGa-------UCCCGAGGU-UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 19523 0.77 0.212063
Target:  5'- gGGAGcCGCCcucGGGGC-CCAGG-GCCCCu -3'
miRNA:   3'- -UCUC-GCGGa--UCCCGaGGUUCuCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.