miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 3' -60.1 NC_006146.1 + 73154 0.66 0.740291
Target:  5'- uGGAGUGCagUAGGGU---GAGGcGCCCCa -3'
miRNA:   3'- -UCUCGCGg-AUCCCGaggUUCU-CGGGG- -5'
28803 3' -60.1 NC_006146.1 + 37878 0.66 0.740291
Target:  5'- uAGAGCagGCC--GGGCUggGAGAGUCCUg -3'
miRNA:   3'- -UCUCG--CGGauCCCGAggUUCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 118636 0.66 0.740291
Target:  5'- gGGGGCGCCcGGGGC-CCAGuacacGuGCgUCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCGaGGUU-----CuCG-GGG- -5'
28803 3' -60.1 NC_006146.1 + 58235 0.66 0.740291
Target:  5'- gGGGGCGUggaCaAGGGCUauaaaAGGGGCCCg -3'
miRNA:   3'- -UCUCGCG---GaUCCCGAgg---UUCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 131493 0.66 0.740291
Target:  5'- uGGGGUGCC-AGGGaucgaCCGggaaAGGGCCCa -3'
miRNA:   3'- -UCUCGCGGaUCCCga---GGU----UCUCGGGg -5'
28803 3' -60.1 NC_006146.1 + 33182 0.66 0.734587
Target:  5'- --cGCGCCgccgcucgguccuGGGcCUCCGGGuGCUCCu -3'
miRNA:   3'- ucuCGCGGau-----------CCC-GAGGUUCuCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 102394 0.66 0.734587
Target:  5'- gGGAGCuggugguaucugucCCUGGGGCggCCAaAGAGCCa- -3'
miRNA:   3'- -UCUCGc-------------GGAUCCCGa-GGU-UCUCGGgg -5'
28803 3' -60.1 NC_006146.1 + 167403 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 127231 0.66 0.730768
Target:  5'- cGGAGgGCCUGGaGCgaaugCGAGccgGGCCCCu -3'
miRNA:   3'- -UCUCgCGGAUCcCGag---GUUC---UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 41602 0.66 0.730768
Target:  5'- gAGAG-GCCcggGGGGCUgguccgcugggcCCGGGcgcagaccAGCCCCa -3'
miRNA:   3'- -UCUCgCGGa--UCCCGA------------GGUUC--------UCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169745 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 102990 0.66 0.730768
Target:  5'- uGAGCaCCUucGGCUCCcacGAGgCCCa -3'
miRNA:   3'- uCUCGcGGAucCCGAGGuu-CUCgGGG- -5'
28803 3' -60.1 NC_006146.1 + 155788 0.66 0.730768
Target:  5'- aAGAGcCGCUcGGuGGCcCUggGGGCCaCCg -3'
miRNA:   3'- -UCUC-GCGGaUC-CCGaGGuuCUCGG-GG- -5'
28803 3' -60.1 NC_006146.1 + 168813 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 168335 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 167881 0.66 0.730768
Target:  5'- gGGAGC-CCcGGGGCggCCcGGGGaCCCUc -3'
miRNA:   3'- -UCUCGcGGaUCCCGa-GGuUCUC-GGGG- -5'
28803 3' -60.1 NC_006146.1 + 170198 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 169267 0.66 0.730768
Target:  5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3'
miRNA:   3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5'
28803 3' -60.1 NC_006146.1 + 44555 0.66 0.730768
Target:  5'- aAGGG-GCC-GGGGCUCCGGGuGGCUg- -3'
miRNA:   3'- -UCUCgCGGaUCCCGAGGUUC-UCGGgg -5'
28803 3' -60.1 NC_006146.1 + 42371 0.66 0.730768
Target:  5'- --cGCGCCgccAGGGUgggCgAGGGGCgCCCc -3'
miRNA:   3'- ucuCGCGGa--UCCCGa--GgUUCUCG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.