miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 74366 0.69 0.87508
Target:  5'- cCGAGAGCUugaCCAGGAGgUUCAGcAGCUc -3'
miRNA:   3'- -GUUCUCGA---GGUUCUCgAGGUUcUCGA- -5'
28803 5' -53 NC_006146.1 + 75282 0.67 0.942309
Target:  5'- gAGGAGC--CGAGAGCgUCCGGGAcGCUc -3'
miRNA:   3'- gUUCUCGagGUUCUCG-AGGUUCU-CGA- -5'
28803 5' -53 NC_006146.1 + 76382 0.68 0.915513
Target:  5'- aGAGGGCgcgCCGGGGGagggaCCGGGGGCg -3'
miRNA:   3'- gUUCUCGa--GGUUCUCga---GGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 81655 0.66 0.969429
Target:  5'- -uGGGGCUCgGAGGGUgCCGGGgaAGCg -3'
miRNA:   3'- guUCUCGAGgUUCUCGaGGUUC--UCGa -5'
28803 5' -53 NC_006146.1 + 95469 0.76 0.502717
Target:  5'- gGGGGGCUCUGAGAGCUCCGGGu--- -3'
miRNA:   3'- gUUCUCGAGGUUCUCGAGGUUCucga -5'
28803 5' -53 NC_006146.1 + 96071 0.68 0.921381
Target:  5'- cCAGGAGCUgCAcaccaggauuaAGAGcCUgCGGGAGCg -3'
miRNA:   3'- -GUUCUCGAgGU-----------UCUC-GAgGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 96770 0.72 0.731231
Target:  5'- gCGGGAGCUCUAccugaagaAGAuccGCUCCAuGGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGU--------UCU---CGAGGU-UCUCGA- -5'
28803 5' -53 NC_006146.1 + 99144 0.67 0.941835
Target:  5'- aCAGGGGCUCCAgcgaccggcAGguggcggagggccAGCUCguAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---------UC-------------UCGAGguUCUCGa -5'
28803 5' -53 NC_006146.1 + 99782 0.66 0.959231
Target:  5'- cCGAGGGCUCCAaucucucaugcuAGuGCUgCAAuGGGCc -3'
miRNA:   3'- -GUUCUCGAGGU------------UCuCGAgGUU-CUCGa -5'
28803 5' -53 NC_006146.1 + 100263 0.77 0.482946
Target:  5'- aCGGGGGCUCCAuGGAGcCUCCuagcGGGGGCUg -3'
miRNA:   3'- -GUUCUCGAGGU-UCUC-GAGG----UUCUCGA- -5'
28803 5' -53 NC_006146.1 + 101965 0.68 0.909392
Target:  5'- cUAGGGGCUCCGGGcucuggcuagaGGCUCUggcucccuugcuAGGGGCUc -3'
miRNA:   3'- -GUUCUCGAGGUUC-----------UCGAGG------------UUCUCGA- -5'
28803 5' -53 NC_006146.1 + 104979 0.66 0.969429
Target:  5'- -uGGGGCUCCcgaGGGGGCUCUggGGa-- -3'
miRNA:   3'- guUCUCGAGG---UUCUCGAGGuuCUcga -5'
28803 5' -53 NC_006146.1 + 105717 0.81 0.30297
Target:  5'- -cAGAGCgCCuAGGGCUCCAAGAGCc -3'
miRNA:   3'- guUCUCGaGGuUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 105742 1.07 0.00646
Target:  5'- cCAAGAGCUCCAAGAGCUCCAAGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 105769 0.86 0.149162
Target:  5'- cCAAGAGCUCCAAGAGCaCCAGG-GCa -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGaGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 105846 0.71 0.790058
Target:  5'- gGAGGcGCUgCCAAGAGCUCgAGGaAGCc -3'
miRNA:   3'- gUUCU-CGA-GGUUCUCGAGgUUC-UCGa -5'
28803 5' -53 NC_006146.1 + 106143 0.68 0.915513
Target:  5'- uGAGAGCUCCAAGgccaGGCUCgAGaAGUc -3'
miRNA:   3'- gUUCUCGAGGUUC----UCGAGgUUcUCGa -5'
28803 5' -53 NC_006146.1 + 113973 0.73 0.710782
Target:  5'- gGGGGGUgcCCGGGGGCUCCGcguuguugaaGGAGCUg -3'
miRNA:   3'- gUUCUCGa-GGUUCUCGAGGU----------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 116815 0.67 0.937458
Target:  5'- gGAGGGCgUCCAGGAcGUgugCCGGGAcGCg -3'
miRNA:   3'- gUUCUCG-AGGUUCU-CGa--GGUUCU-CGa -5'
28803 5' -53 NC_006146.1 + 116984 0.66 0.966257
Target:  5'- gAGGAGCUCaacGAGCgCguGGAGCg -3'
miRNA:   3'- gUUCUCGAGguuCUCGaGguUCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.