miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28803 5' -53 NC_006146.1 + 49524 0.7 0.826383
Target:  5'- --cGGGUgaUCCGGGGGCUCCucuGGGGGCg -3'
miRNA:   3'- guuCUCG--AGGUUCUCGAGG---UUCUCGa -5'
28803 5' -53 NC_006146.1 + 99144 0.67 0.941835
Target:  5'- aCAGGGGCUCCAgcgaccggcAGguggcggagggccAGCUCguAGAGCc -3'
miRNA:   3'- -GUUCUCGAGGU---------UC-------------UCGAGguUCUCGa -5'
28803 5' -53 NC_006146.1 + 96071 0.68 0.921381
Target:  5'- cCAGGAGCUgCAcaccaggauuaAGAGcCUgCGGGAGCg -3'
miRNA:   3'- -GUUCUCGAgGU-----------UCUC-GAgGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 47306 0.67 0.95126
Target:  5'- ---uGGCUggCCAAGAGCUUCuuuGAGCUu -3'
miRNA:   3'- guucUCGA--GGUUCUCGAGGuu-CUCGA- -5'
28803 5' -53 NC_006146.1 + 17783 0.78 0.434337
Target:  5'- gCAAGAGCaugagggUCCc-GGGCUCCGAGAGCa -3'
miRNA:   3'- -GUUCUCG-------AGGuuCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 105717 0.81 0.30297
Target:  5'- -cAGAGCgCCuAGGGCUCCAAGAGCc -3'
miRNA:   3'- guUCUCGaGGuUCUCGAGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 105769 0.86 0.149162
Target:  5'- cCAAGAGCUCCAAGAGCaCCAGG-GCa -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGaGGUUCuCGa -5'
28803 5' -53 NC_006146.1 + 28779 0.67 0.942309
Target:  5'- uGGGAGCauacccuggggCCGAGGGCUCacuuGGGGCa -3'
miRNA:   3'- gUUCUCGa----------GGUUCUCGAGgu--UCUCGa -5'
28803 5' -53 NC_006146.1 + 105742 1.07 0.00646
Target:  5'- cCAAGAGCUCCAAGAGCUCCAAGAGCUc -3'
miRNA:   3'- -GUUCUCGAGGUUCUCGAGGUUCUCGA- -5'
28803 5' -53 NC_006146.1 + 28422 0.67 0.95126
Target:  5'- gGAGgcGGCUCCGGGucaCUCCAcgGGAGCc -3'
miRNA:   3'- gUUC--UCGAGGUUCuc-GAGGU--UCUCGa -5'
28803 5' -53 NC_006146.1 + 24353 0.67 0.952932
Target:  5'- gAGGAGCUaCAAGuaguggcgcagggccAGCUCCAGGGcGCg -3'
miRNA:   3'- gUUCUCGAgGUUC---------------UCGAGGUUCU-CGa -5'
28803 5' -53 NC_006146.1 + 123440 0.75 0.563923
Target:  5'- gAAGAgGCUCCuGGAGCUC-GAGAGCa -3'
miRNA:   3'- gUUCU-CGAGGuUCUCGAGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 43901 0.75 0.574339
Target:  5'- uGGGAGC-CCAcAGAGCUCCGGGAccGCg -3'
miRNA:   3'- gUUCUCGaGGU-UCUCGAGGUUCU--CGa -5'
28803 5' -53 NC_006146.1 + 113973 0.73 0.710782
Target:  5'- gGGGGGUgcCCGGGGGCUCCGcguuguugaaGGAGCUg -3'
miRNA:   3'- gUUCUCGa-GGUUCUCGAGGU----------UCUCGA- -5'
28803 5' -53 NC_006146.1 + 44562 0.67 0.946909
Target:  5'- -cGGGGCUCCGGGuGGCUggcggaaaugCCAGGAGg- -3'
miRNA:   3'- guUCUCGAGGUUC-UCGA----------GGUUCUCga -5'
28803 5' -53 NC_006146.1 + 75282 0.67 0.942309
Target:  5'- gAGGAGC--CGAGAGCgUCCGGGAcGCUc -3'
miRNA:   3'- gUUCUCGagGUUCUCG-AGGUUCU-CGA- -5'
28803 5' -53 NC_006146.1 + 146118 0.66 0.972382
Target:  5'- -cGGAG-UCCAgaGGGGC-CCGAGGGCc -3'
miRNA:   3'- guUCUCgAGGU--UCUCGaGGUUCUCGa -5'
28803 5' -53 NC_006146.1 + 150684 0.66 0.966257
Target:  5'- gGGGAGUggCCAGGGGgaCgGAGGGCc -3'
miRNA:   3'- gUUCUCGa-GGUUCUCgaGgUUCUCGa -5'
28803 5' -53 NC_006146.1 + 124749 0.66 0.966257
Target:  5'- --cGAGUUCCuGGGGCuggUCCAcaaucAGAGCa -3'
miRNA:   3'- guuCUCGAGGuUCUCG---AGGU-----UCUCGa -5'
28803 5' -53 NC_006146.1 + 116984 0.66 0.966257
Target:  5'- gAGGAGCUCaacGAGCgCguGGAGCg -3'
miRNA:   3'- gUUCUCGAGguuCUCGaGguUCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.