miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28804 5' -56.2 NC_006146.1 + 111886 0.66 0.939431
Target:  5'- cGGugCgUUCACCAgGCagcgCGGGAGGCa- -3'
miRNA:   3'- -CCugG-GAGUGGUaUGa---GCUCUCCGgc -5'
28804 5' -56.2 NC_006146.1 + 115388 0.66 0.939431
Target:  5'- aGGCCCUgGCC--GCUCGcgugcaGGAGGCa- -3'
miRNA:   3'- cCUGGGAgUGGuaUGAGC------UCUCCGgc -5'
28804 5' -56.2 NC_006146.1 + 123570 0.66 0.939431
Target:  5'- cGGCgCCUgGCCcgGCU--GGAGGCCa -3'
miRNA:   3'- cCUG-GGAgUGGuaUGAgcUCUCCGGc -5'
28804 5' -56.2 NC_006146.1 + 103534 0.66 0.93468
Target:  5'- --cCCCUCcCCGUACUCGuGGGacCCGg -3'
miRNA:   3'- ccuGGGAGuGGUAUGAGCuCUCc-GGC- -5'
28804 5' -56.2 NC_006146.1 + 123241 0.66 0.93468
Target:  5'- aGACCCUgGCCGccg-CGcuGGGCCGg -3'
miRNA:   3'- cCUGGGAgUGGUaugaGCucUCCGGC- -5'
28804 5' -56.2 NC_006146.1 + 55115 0.66 0.931719
Target:  5'- -aACCCUgGCCAccUGCUCGuacucggccuccgguGGGGGCaCGa -3'
miRNA:   3'- ccUGGGAgUGGU--AUGAGC---------------UCUCCG-GC- -5'
28804 5' -56.2 NC_006146.1 + 43179 0.66 0.929699
Target:  5'- cGGGCCCagCcCCAUcaGCUccucgCGGGAGGCgGg -3'
miRNA:   3'- -CCUGGGa-GuGGUA--UGA-----GCUCUCCGgC- -5'
28804 5' -56.2 NC_006146.1 + 156232 0.66 0.929699
Target:  5'- cGGGCCCccUCgGCCGUGgaCGGGGuGCCGu -3'
miRNA:   3'- -CCUGGG--AG-UGGUAUgaGCUCUcCGGC- -5'
28804 5' -56.2 NC_006146.1 + 97713 0.66 0.929699
Target:  5'- aGGAgcCCCUCGCUcgaccuAUGC-CGGGAGGUg- -3'
miRNA:   3'- -CCU--GGGAGUGG------UAUGaGCUCUCCGgc -5'
28804 5' -56.2 NC_006146.1 + 52287 0.66 0.929699
Target:  5'- cGGACCUUCAUCGUGgUCaAGAauuGCCa -3'
miRNA:   3'- -CCUGGGAGUGGUAUgAGcUCUc--CGGc -5'
28804 5' -56.2 NC_006146.1 + 22872 0.66 0.924488
Target:  5'- uGGGCCCcaaCGCCGauCUCaacAGAGGCCc -3'
miRNA:   3'- -CCUGGGa--GUGGUauGAGc--UCUCCGGc -5'
28804 5' -56.2 NC_006146.1 + 20122 0.66 0.924488
Target:  5'- uGGCCCggCACC-UGCU--GGGGGCCa -3'
miRNA:   3'- cCUGGGa-GUGGuAUGAgcUCUCCGGc -5'
28804 5' -56.2 NC_006146.1 + 60952 0.66 0.924488
Target:  5'- -uGCCUgUCACUGU-UUCGAGGGGCCu -3'
miRNA:   3'- ccUGGG-AGUGGUAuGAGCUCUCCGGc -5'
28804 5' -56.2 NC_006146.1 + 123167 0.66 0.922879
Target:  5'- aGGGCcagccccuccaagaCCUCcCCAauCUCGAG-GGCCGa -3'
miRNA:   3'- -CCUG--------------GGAGuGGUauGAGCUCuCCGGC- -5'
28804 5' -56.2 NC_006146.1 + 44400 0.66 0.919046
Target:  5'- gGGGCCgggcacggCGCCuucCUCGAGGGGCUc -3'
miRNA:   3'- -CCUGGga------GUGGuauGAGCUCUCCGGc -5'
28804 5' -56.2 NC_006146.1 + 151321 0.66 0.919046
Target:  5'- aGGAgcugUCCUCgcGCCGgAC-CGAGAGGUCGc -3'
miRNA:   3'- -CCU----GGGAG--UGGUaUGaGCUCUCCGGC- -5'
28804 5' -56.2 NC_006146.1 + 11834 0.66 0.913952
Target:  5'- gGGACCCcuugCGCCGggcccugcuucucggGCUUGGGgcGGGCCc -3'
miRNA:   3'- -CCUGGGa---GUGGUa--------------UGAGCUC--UCCGGc -5'
28804 5' -56.2 NC_006146.1 + 156726 0.66 0.913375
Target:  5'- gGGGCUCagagggCACC-UACUCGAGgcAGGCUu -3'
miRNA:   3'- -CCUGGGa-----GUGGuAUGAGCUC--UCCGGc -5'
28804 5' -56.2 NC_006146.1 + 153649 0.66 0.913375
Target:  5'- gGGGCUCagagggCACC-UACUCGAGgcAGGCUu -3'
miRNA:   3'- -CCUGGGa-----GUGGuAUGAGCUC--UCCGGc -5'
28804 5' -56.2 NC_006146.1 + 150571 0.66 0.913375
Target:  5'- gGGGCUCagagggCACC-UACUCGAGgcAGGCUu -3'
miRNA:   3'- -CCUGGGa-----GUGGuAUGAGCUC--UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.