Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28805 | 3' | -55.2 | NC_006146.1 | + | 13531 | 0.66 | 0.933686 |
Target: 5'- cGAGGCGUGG--ACAGGAaCCuGCUgCAg -3' miRNA: 3'- -CUCCGUAUUggUGUCCU-GGuCGAgGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 9143 | 0.66 | 0.933686 |
Target: 5'- cGGGGCGUuGCCucuuuCGGGgacgGCgGGCUCCc -3' miRNA: 3'- -CUCCGUAuUGGu----GUCC----UGgUCGAGGu -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 49007 | 0.66 | 0.933686 |
Target: 5'- uGGGGCGUugcccAGCUugGGGACCugacGC-CCGa -3' miRNA: 3'- -CUCCGUA-----UUGGugUCCUGGu---CGaGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 91022 | 0.66 | 0.933686 |
Target: 5'- aGAGGCAUGcucACCACGa---CAGCUUCAu -3' miRNA: 3'- -CUCCGUAU---UGGUGUccugGUCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 54575 | 0.66 | 0.933686 |
Target: 5'- uGGGCAUGAUCA-GGGACCucuguGcCUCCu -3' miRNA: 3'- cUCCGUAUUGGUgUCCUGGu----C-GAGGu -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 50182 | 0.66 | 0.933686 |
Target: 5'- uGGGgGUGAUCucccggauCAGGugCuGCUCCAg -3' miRNA: 3'- cUCCgUAUUGGu-------GUCCugGuCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 49011 | 0.66 | 0.933686 |
Target: 5'- -cGGCuaggAGCCGCAGGGCguuCUCCGg -3' miRNA: 3'- cuCCGua--UUGGUGUCCUGgucGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 166741 | 0.66 | 0.928495 |
Target: 5'- uGGGCAUGGgUuucggACGGGACCAGCa--- -3' miRNA: 3'- cUCCGUAUUgG-----UGUCCUGGUCGaggu -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 48027 | 0.66 | 0.928495 |
Target: 5'- gGAGGC---ACgGCGGG-CCGGCUCgGg -3' miRNA: 3'- -CUCCGuauUGgUGUCCuGGUCGAGgU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 104690 | 0.66 | 0.928495 |
Target: 5'- aGGGGCAgcugGGCCugGaucucgucgccuGGGUCAGCUCCu -3' miRNA: 3'- -CUCCGUa---UUGGugU------------CCUGGUCGAGGu -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 128762 | 0.66 | 0.927962 |
Target: 5'- cGAGGCcuucuucuggaguGUGGCCAgCAGGGCCgaAGCgugaucggCCAc -3' miRNA: 3'- -CUCCG-------------UAUUGGU-GUCCUGG--UCGa-------GGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 61458 | 0.66 | 0.927962 |
Target: 5'- uGAGGUgucucccgacgccGUGGCCgagugGCAGGAUCaccagGGCUCCGa -3' miRNA: 3'- -CUCCG-------------UAUUGG-----UGUCCUGG-----UCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 151092 | 0.66 | 0.923058 |
Target: 5'- aAGGCGUAGa-GCAuGuCCAGCUCCGa -3' miRNA: 3'- cUCCGUAUUggUGUcCuGGUCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 46044 | 0.66 | 0.923058 |
Target: 5'- cGGGGCccu-CCAgGGGACgCAGCgagugCCAu -3' miRNA: 3'- -CUCCGuauuGGUgUCCUG-GUCGa----GGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 33490 | 0.66 | 0.917376 |
Target: 5'- aGGGGCGUGGuCCcCGGGACCccAGCaCCc -3' miRNA: 3'- -CUCCGUAUU-GGuGUCCUGG--UCGaGGu -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 4191 | 0.66 | 0.917376 |
Target: 5'- cGGGCu---CgGCGGGaACCGGCUUCAu -3' miRNA: 3'- cUCCGuauuGgUGUCC-UGGUCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 847 | 0.66 | 0.917376 |
Target: 5'- uGGGGCAUAgggGCCcUAGGAgCAGCgcuUCUAa -3' miRNA: 3'- -CUCCGUAU---UGGuGUCCUgGUCG---AGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 159369 | 0.66 | 0.917376 |
Target: 5'- gGGGGCGUAGCUGacc-GCCAGCUCgCAg -3' miRNA: 3'- -CUCCGUAUUGGUguccUGGUCGAG-GU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 149663 | 0.66 | 0.917376 |
Target: 5'- -cGGCAgcgcGCCugcacgaacuuGCAGGccguuuuccuACCAGCUCCAc -3' miRNA: 3'- cuCCGUau--UGG-----------UGUCC----------UGGUCGAGGU- -5' |
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28805 | 3' | -55.2 | NC_006146.1 | + | 113673 | 0.66 | 0.917376 |
Target: 5'- aGAGGUGgcucgGGCC-CGGGcCCGGcCUCCGg -3' miRNA: 3'- -CUCCGUa----UUGGuGUCCuGGUC-GAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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