miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 13531 0.66 0.933686
Target:  5'- cGAGGCGUGG--ACAGGAaCCuGCUgCAg -3'
miRNA:   3'- -CUCCGUAUUggUGUCCU-GGuCGAgGU- -5'
28805 3' -55.2 NC_006146.1 + 149663 0.66 0.917376
Target:  5'- -cGGCAgcgcGCCugcacgaacuuGCAGGccguuuuccuACCAGCUCCAc -3'
miRNA:   3'- cuCCGUau--UGG-----------UGUCC----------UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 4191 0.66 0.917376
Target:  5'- cGGGCu---CgGCGGGaACCGGCUUCAu -3'
miRNA:   3'- cUCCGuauuGgUGUCC-UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 49011 0.66 0.933686
Target:  5'- -cGGCuaggAGCCGCAGGGCguuCUCCGg -3'
miRNA:   3'- cuCCGua--UUGGUGUCCUGgucGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 170082 0.66 0.91145
Target:  5'- uGGGgAUGGCCGgcgggaGGGGCCGGCgCCGc -3'
miRNA:   3'- cUCCgUAUUGGUg-----UCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 58635 0.66 0.91145
Target:  5'- cGGGCAUcuUCACGGGGCUcuuuguccccgAGCUCUu -3'
miRNA:   3'- cUCCGUAuuGGUGUCCUGG-----------UCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 161825 0.66 0.91145
Target:  5'- -cGGCuuuccuuuugGGCCACgccccgugGGaGACCGGCUCCAc -3'
miRNA:   3'- cuCCGua--------UUGGUG--------UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 52661 0.66 0.915035
Target:  5'- aGGGCGUccAGCCucgcccccucgucCAGGAcaucguCCAGCUCCGg -3'
miRNA:   3'- cUCCGUA--UUGGu------------GUCCU------GGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 56072 0.66 0.916794
Target:  5'- aAGGCGUcccaccgGGCCAagUAGGugucggccACCAGCUCCu -3'
miRNA:   3'- cUCCGUA-------UUGGU--GUCC--------UGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 113673 0.66 0.917376
Target:  5'- aGAGGUGgcucgGGCC-CGGGcCCGGcCUCCGg -3'
miRNA:   3'- -CUCCGUa----UUGGuGUCCuGGUC-GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 93922 0.66 0.910844
Target:  5'- gGAGGCGUAgaaggcgGCgGCGGGGCUccGCUCUc -3'
miRNA:   3'- -CUCCGUAU-------UGgUGUCCUGGu-CGAGGu -5'
28805 3' -55.2 NC_006146.1 + 66832 0.66 0.917376
Target:  5'- uGGGCuuUGACCGaucGGACCcGCUCUAc -3'
miRNA:   3'- cUCCGu-AUUGGUgu-CCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 9143 0.66 0.933686
Target:  5'- cGGGGCGUuGCCucuuuCGGGgacgGCgGGCUCCc -3'
miRNA:   3'- -CUCCGUAuUGGu----GUCC----UGgUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 49007 0.66 0.933686
Target:  5'- uGGGGCGUugcccAGCUugGGGACCugacGC-CCGa -3'
miRNA:   3'- -CUCCGUA-----UUGGugUCCUGGu---CGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 91022 0.66 0.933686
Target:  5'- aGAGGCAUGcucACCACGa---CAGCUUCAu -3'
miRNA:   3'- -CUCCGUAU---UGGUGUccugGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 54575 0.66 0.933686
Target:  5'- uGGGCAUGAUCA-GGGACCucuguGcCUCCu -3'
miRNA:   3'- cUCCGUAUUGGUgUCCUGGu----C-GAGGu -5'
28805 3' -55.2 NC_006146.1 + 50182 0.66 0.933686
Target:  5'- uGGGgGUGAUCucccggauCAGGugCuGCUCCAg -3'
miRNA:   3'- cUCCgUAUUGGu-------GUCCugGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 104690 0.66 0.928495
Target:  5'- aGGGGCAgcugGGCCugGaucucgucgccuGGGUCAGCUCCu -3'
miRNA:   3'- -CUCCGUa---UUGGugU------------CCUGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 128762 0.66 0.927962
Target:  5'- cGAGGCcuucuucuggaguGUGGCCAgCAGGGCCgaAGCgugaucggCCAc -3'
miRNA:   3'- -CUCCG-------------UAUUGGU-GUCCUGG--UCGa-------GGU- -5'
28805 3' -55.2 NC_006146.1 + 76914 0.66 0.917376
Target:  5'- aGAGGU--GACCGCGGGGCU-GCagCCGg -3'
miRNA:   3'- -CUCCGuaUUGGUGUCCUGGuCGa-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.