miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 104872 1.08 0.003509
Target:  5'- uGAGGCAUAACCACAGGACCAGCUCCAa -3'
miRNA:   3'- -CUCCGUAUUGGUGUCCUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 53893 0.79 0.273037
Target:  5'- aGGGCGUAGCCcaggucCAGGGCCcGCUCCAc -3'
miRNA:   3'- cUCCGUAUUGGu-----GUCCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 64565 0.77 0.352558
Target:  5'- uGGGCAggAAgCAgGGGGCCAGCUCCu -3'
miRNA:   3'- cUCCGUa-UUgGUgUCCUGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 24352 0.77 0.376911
Target:  5'- gGAGGagcuacaaGUAguGgCGCAGGGCCAGCUCCAg -3'
miRNA:   3'- -CUCCg-------UAU--UgGUGUCCUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 43641 0.76 0.411098
Target:  5'- cGGGGCGUGGCCGCcuggggagaGGGGCCcGGCUCgCAu -3'
miRNA:   3'- -CUCCGUAUUGGUG---------UCCUGG-UCGAG-GU- -5'
28805 3' -55.2 NC_006146.1 + 113497 0.75 0.465813
Target:  5'- aGAGGCGUGcgucgGCCgggcacggucGCGGGGCCAGC-CCAc -3'
miRNA:   3'- -CUCCGUAU-----UGG----------UGUCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 162008 0.74 0.49455
Target:  5'- uAGGCAc--CCugGGaGACCGGCUCCAc -3'
miRNA:   3'- cUCCGUauuGGugUC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 60474 0.74 0.544116
Target:  5'- gGGGaGCGgugagaGGCCGgGGGGCCAGCUCCc -3'
miRNA:   3'- -CUC-CGUa-----UUGGUgUCCUGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 102513 0.73 0.564407
Target:  5'- cAGGCAgcACCACGGGAgucaCCAGCaccgCCAc -3'
miRNA:   3'- cUCCGUauUGGUGUCCU----GGUCGa---GGU- -5'
28805 3' -55.2 NC_006146.1 + 114204 0.73 0.582837
Target:  5'- aGAGGCucagguuguCCAgCAGGGCCAGCcCCAg -3'
miRNA:   3'- -CUCCGuauu-----GGU-GUCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 161769 0.73 0.584893
Target:  5'- aGAGGCAacGCCcCgugGGaGACCGGCUCCAc -3'
miRNA:   3'- -CUCCGUauUGGuG---UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 108069 0.72 0.657295
Target:  5'- -cGGCcUGGCCACGGcGGCCagGGUUCCAu -3'
miRNA:   3'- cuCCGuAUUGGUGUC-CUGG--UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 75270 0.71 0.708547
Target:  5'- aGGGGCuuuUGACC-CAaGACCuGCUCCAu -3'
miRNA:   3'- -CUCCGu--AUUGGuGUcCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 16338 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 13260 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 25572 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 22494 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 99133 0.71 0.708547
Target:  5'- cAGGCGUcuCCACAGGGgcuCCAGCgaCCGg -3'
miRNA:   3'- cUCCGUAuuGGUGUCCU---GGUCGa-GGU- -5'
28805 3' -55.2 NC_006146.1 + 19416 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 28650 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.