miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 71178 0.7 0.728648
Target:  5'- uGGGUggugGUAGCCGguGGGCCAGUagaagUCCAg -3'
miRNA:   3'- cUCCG----UAUUGGUguCCUGGUCG-----AGGU- -5'
28805 3' -55.2 NC_006146.1 + 106295 0.7 0.738575
Target:  5'- cGGGUGUGuccugacagGCCucaAGGGCCAGUUCCAg -3'
miRNA:   3'- cUCCGUAU---------UGGug-UCCUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 130313 0.7 0.758134
Target:  5'- gGAGGUucGGCCGCccAGGGCCAGgaCCu -3'
miRNA:   3'- -CUCCGuaUUGGUG--UCCUGGUCgaGGu -5'
28805 3' -55.2 NC_006146.1 + 130533 0.7 0.767747
Target:  5'- cGGGCGgcGACCAgGGGGCCuuCUCCGc -3'
miRNA:   3'- cUCCGUa-UUGGUgUCCUGGucGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 42568 0.69 0.775349
Target:  5'- -cGGCuucaucuccagGGCCAgCAGGACCAGC-CCGg -3'
miRNA:   3'- cuCCGua---------UUGGU-GUCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 98294 0.69 0.777236
Target:  5'- uAGGCGgugGGgCugAGGGCguGCUCCGu -3'
miRNA:   3'- cUCCGUa--UUgGugUCCUGguCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 155473 0.69 0.777236
Target:  5'- cAGGCAgGACUGCAgccGGGCCAGCcCCu -3'
miRNA:   3'- cUCCGUaUUGGUGU---CCUGGUCGaGGu -5'
28805 3' -55.2 NC_006146.1 + 68971 0.69 0.786592
Target:  5'- aGGGCAgAGCCGCugauaGGGAgcccaaaaccuUCAGCUCCAg -3'
miRNA:   3'- cUCCGUaUUGGUG-----UCCU-----------GGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35334 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34870 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33662 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35520 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34777 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34684 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34591 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33755 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33383 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33476 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33569 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35427 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.