miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 66832 0.66 0.917376
Target:  5'- uGGGCuuUGACCGaucGGACCcGCUCUAc -3'
miRNA:   3'- cUCCGu-AUUGGUgu-CCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 76914 0.66 0.917376
Target:  5'- aGAGGU--GACCGCGGGGCU-GCagCCGg -3'
miRNA:   3'- -CUCCGuaUUGGUGUCCUGGuCGa-GGU- -5'
28805 3' -55.2 NC_006146.1 + 56072 0.66 0.916794
Target:  5'- aAGGCGUcccaccgGGCCAagUAGGugucggccACCAGCUCCu -3'
miRNA:   3'- cUCCGUA-------UUGGU--GUCC--------UGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 52661 0.66 0.915035
Target:  5'- aGGGCGUccAGCCucgcccccucgucCAGGAcaucguCCAGCUCCGg -3'
miRNA:   3'- cUCCGUA--UUGGu------------GUCCU------GGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 58635 0.66 0.91145
Target:  5'- cGGGCAUcuUCACGGGGCUcuuuguccccgAGCUCUu -3'
miRNA:   3'- cUCCGUAuuGGUGUCCUGG-----------UCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 170082 0.66 0.91145
Target:  5'- uGGGgAUGGCCGgcgggaGGGGCCGGCgCCGc -3'
miRNA:   3'- cUCCgUAUUGGUg-----UCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 161825 0.66 0.91145
Target:  5'- -cGGCuuuccuuuugGGCCACgccccgugGGaGACCGGCUCCAc -3'
miRNA:   3'- cuCCGua--------UUGGUG--------UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 93922 0.66 0.910844
Target:  5'- gGAGGCGUAgaaggcgGCgGCGGGGCUccGCUCUc -3'
miRNA:   3'- -CUCCGUAU-------UGgUGUCCUGGu-CGAGGu -5'
28805 3' -55.2 NC_006146.1 + 132898 0.67 0.905281
Target:  5'- cAGGUucacguGCCuCAGGAguUCAGCUCCAc -3'
miRNA:   3'- cUCCGuau---UGGuGUCCU--GGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 16946 0.67 0.905281
Target:  5'- cGAGGCAccguGCCcaACGGGAgCGGCgggCCu -3'
miRNA:   3'- -CUCCGUau--UGG--UGUCCUgGUCGa--GGu -5'
28805 3' -55.2 NC_006146.1 + 86611 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 86577 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 86543 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 71779 0.67 0.905281
Target:  5'- uGGGGCugGUGGCguUAGGGCUuguGGCUCCc -3'
miRNA:   3'- -CUCCG--UAUUGguGUCCUGG---UCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 142977 0.67 0.899524
Target:  5'- gGGGGCuuccgcccuagcccuUGGCCGUGGGAgCAGCUCCc -3'
miRNA:   3'- -CUCCGu--------------AUUGGUGUCCUgGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 142737 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 132982 0.67 0.898872
Target:  5'- gGGGGCGguggaGACCGCGGGugCGGUg--- -3'
miRNA:   3'- -CUCCGUa----UUGGUGUCCugGUCGaggu -5'
28805 3' -55.2 NC_006146.1 + 158128 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 69988 0.67 0.898872
Target:  5'- aAGGCGUAGCguauGCGuGGACUGGcCUCCAu -3'
miRNA:   3'- cUCCGUAUUGg---UGU-CCUGGUC-GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 145815 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.