miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 151971 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 148893 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 145815 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 142737 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 145654 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 154887 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 148731 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 31946 0.67 0.892226
Target:  5'- aGGGCAaGGCCAaagcCAGGGCCAGguuaggCCAa -3'
miRNA:   3'- cUCCGUaUUGGU----GUCCUGGUCga----GGU- -5'
28805 3' -55.2 NC_006146.1 + 68178 0.67 0.892226
Target:  5'- cAGGCGcAGCguCAGGACgcgggcgcagCGGCUCCGg -3'
miRNA:   3'- cUCCGUaUUGguGUCCUG----------GUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 149249 0.67 0.892226
Target:  5'- -uGGUcaAUGGCCACGGGaauGCCGugccGCUCCGc -3'
miRNA:   3'- cuCCG--UAUUGGUGUCC---UGGU----CGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 142576 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 129903 0.67 0.892226
Target:  5'- -cGGCucuucgcccUGACCagACAGGGCCAGCUgCu -3'
miRNA:   3'- cuCCGu--------AUUGG--UGUCCUGGUCGAgGu -5'
28805 3' -55.2 NC_006146.1 + 151809 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 157965 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 125627 0.67 0.891548
Target:  5'- uGGGGCAUGGgCugGugagcggGGACgGGUUCCAa -3'
miRNA:   3'- -CUCCGUAUUgGugU-------CCUGgUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 125324 0.67 0.885346
Target:  5'- cGAGGCA-GGCCGCcuGGCUgcgcgAGCUCCu -3'
miRNA:   3'- -CUCCGUaUUGGUGucCUGG-----UCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 30255 0.67 0.885346
Target:  5'- aGAGaGCAUcACCACAGGcACCaaggAGCgCCGu -3'
miRNA:   3'- -CUC-CGUAuUGGUGUCC-UGG----UCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 125841 0.67 0.885346
Target:  5'- cGAGGCAccucAGCCGCcccuaGGGAgCCGGCcCCGg -3'
miRNA:   3'- -CUCCGUa---UUGGUG-----UCCU-GGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 94605 0.67 0.881107
Target:  5'- aGAGGaagAGCCGCGuccagcccacguacuGGGCCGGgUCCAu -3'
miRNA:   3'- -CUCCguaUUGGUGU---------------CCUGGUCgAGGU- -5'
28805 3' -55.2 NC_006146.1 + 156584 0.67 0.870901
Target:  5'- --uGCGUGAguucuCCAgCAGGugcGCCAGCUCCAg -3'
miRNA:   3'- cucCGUAUU-----GGU-GUCC---UGGUCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.