miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 847 0.66 0.917376
Target:  5'- uGGGGCAUAgggGCCcUAGGAgCAGCgcuUCUAa -3'
miRNA:   3'- -CUCCGUAU---UGGuGUCCUgGUCG---AGGU- -5'
28805 3' -55.2 NC_006146.1 + 4191 0.66 0.917376
Target:  5'- cGGGCu---CgGCGGGaACCGGCUUCAu -3'
miRNA:   3'- cUCCGuauuGgUGUCC-UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 4869 0.68 0.831056
Target:  5'- aGGGGCGggGGCCACAGGcACCcccgauGC-CCAc -3'
miRNA:   3'- -CUCCGUa-UUGGUGUCC-UGGu-----CGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 9143 0.66 0.933686
Target:  5'- cGGGGCGUuGCCucuuuCGGGgacgGCgGGCUCCc -3'
miRNA:   3'- -CUCCGUAuUGGu----GUCC----UGgUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 11287 0.67 0.898872
Target:  5'- aAGGCGUGcCCcaGCAGcGCCAGUUCUAc -3'
miRNA:   3'- cUCCGUAUuGG--UGUCcUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 13260 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 13531 0.66 0.933686
Target:  5'- cGAGGCGUGG--ACAGGAaCCuGCUgCAg -3'
miRNA:   3'- -CUCCGUAUUggUGUCCU-GGuCGAgGU- -5'
28805 3' -55.2 NC_006146.1 + 16338 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 16946 0.67 0.905281
Target:  5'- cGAGGCAccguGCCcaACGGGAgCGGCgggCCu -3'
miRNA:   3'- -CUCCGUau--UGG--UGUCCUgGUCGa--GGu -5'
28805 3' -55.2 NC_006146.1 + 19416 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 22494 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 24352 0.77 0.376911
Target:  5'- gGAGGagcuacaaGUAguGgCGCAGGGCCAGCUCCAg -3'
miRNA:   3'- -CUCCg-------UAU--UgGUGUCCUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 25572 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 28650 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 30255 0.67 0.885346
Target:  5'- aGAGaGCAUcACCACAGGcACCaaggAGCgCCGu -3'
miRNA:   3'- -CUC-CGUAuUGGUGUCC-UGG----UCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 31946 0.67 0.892226
Target:  5'- aGGGCAaGGCCAaagcCAGGGCCAGguuaggCCAa -3'
miRNA:   3'- cUCCGUaUUGGU----GUCCUGGUCga----GGU- -5'
28805 3' -55.2 NC_006146.1 + 33383 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33476 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33490 0.66 0.917376
Target:  5'- aGGGGCGUGGuCCcCGGGACCccAGCaCCc -3'
miRNA:   3'- -CUCCGUAUU-GGuGUCCUGG--UCGaGGu -5'
28805 3' -55.2 NC_006146.1 + 33569 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.