miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 33662 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33755 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33848 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 33940 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34033 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34126 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34219 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34312 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34405 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34498 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34591 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34684 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34777 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34870 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 34962 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35055 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35148 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35241 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35334 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 35427 0.69 0.790295
Target:  5'- cGGGGCAgcgGACC-CAGGggcacccggcccccgGCCccgAGCUCCAg -3'
miRNA:   3'- -CUCCGUa--UUGGuGUCC---------------UGG---UCGAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.