miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 170082 0.66 0.91145
Target:  5'- uGGGgAUGGCCGgcgggaGGGGCCGGCgCCGc -3'
miRNA:   3'- cUCCgUAUUGGUg-----UCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 166741 0.66 0.928495
Target:  5'- uGGGCAUGGgUuucggACGGGACCAGCa--- -3'
miRNA:   3'- cUCCGUAUUgG-----UGUCCUGGUCGaggu -5'
28805 3' -55.2 NC_006146.1 + 162008 0.74 0.49455
Target:  5'- uAGGCAc--CCugGGaGACCGGCUCCAc -3'
miRNA:   3'- cUCCGUauuGGugUC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 161971 0.69 0.804867
Target:  5'- cGGGCAacGCCcCgugGGaGACCGGCUCCAc -3'
miRNA:   3'- cUCCGUauUGGuG---UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 161904 0.69 0.813769
Target:  5'- uGGGCAacGCCcCgugGGaGACCGGCUCCAc -3'
miRNA:   3'- cUCCGUauUGGuG---UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 161825 0.66 0.91145
Target:  5'- -cGGCuuuccuuuugGGCCACgccccgugGGaGACCGGCUCCAc -3'
miRNA:   3'- cuCCGua--------UUGGUG--------UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 161769 0.73 0.584893
Target:  5'- aGAGGCAacGCCcCgugGGaGACCGGCUCCAc -3'
miRNA:   3'- -CUCCGUauUGGuG---UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 160611 0.69 0.804867
Target:  5'- cGAGGUcg-GCCGCcuGGcauGCCAGCUCCGc -3'
miRNA:   3'- -CUCCGuauUGGUGu-CC---UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 159369 0.66 0.917376
Target:  5'- gGGGGCGUAGCUGacc-GCCAGCUCgCAg -3'
miRNA:   3'- -CUCCGUAUUGGUguccUGGUCGAG-GU- -5'
28805 3' -55.2 NC_006146.1 + 158128 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 157965 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 157781 0.68 0.839426
Target:  5'- uGGGCccgggAGCCcccguccacaaACAGGGCCAGgUCCGa -3'
miRNA:   3'- cUCCGua---UUGG-----------UGUCCUGGUCgAGGU- -5'
28805 3' -55.2 NC_006146.1 + 156584 0.67 0.870901
Target:  5'- --uGCGUGAguucuCCAgCAGGugcGCCAGCUCCAg -3'
miRNA:   3'- cucCGUAUU-----GGU-GUCC---UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 155473 0.69 0.777236
Target:  5'- cAGGCAgGACUGCAgccGGGCCAGCcCCu -3'
miRNA:   3'- cUCCGUaUUGGUGU---CCUGGUCGaGGu -5'
28805 3' -55.2 NC_006146.1 + 155049 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 154887 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 151971 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 151809 0.67 0.892226
Target:  5'- aAGGCc--ACCggGCGGGGCCAGggcCUCCAg -3'
miRNA:   3'- cUCCGuauUGG--UGUCCUGGUC---GAGGU- -5'
28805 3' -55.2 NC_006146.1 + 151092 0.66 0.923058
Target:  5'- aAGGCGUAGa-GCAuGuCCAGCUCCGa -3'
miRNA:   3'- cUCCGUAUUggUGUcCuGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 149663 0.66 0.917376
Target:  5'- -cGGCAgcgcGCCugcacgaacuuGCAGGccguuuuccuACCAGCUCCAc -3'
miRNA:   3'- cuCCGUau--UGG-----------UGUCC----------UGGUCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.