miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 53893 0.79 0.273037
Target:  5'- aGGGCGUAGCCcaggucCAGGGCCcGCUCCAc -3'
miRNA:   3'- cUCCGUAUUGGu-----GUCCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 130313 0.7 0.758134
Target:  5'- gGAGGUucGGCCGCccAGGGCCAGgaCCu -3'
miRNA:   3'- -CUCCGuaUUGGUG--UCCUGGUCgaGGu -5'
28805 3' -55.2 NC_006146.1 + 98294 0.69 0.777236
Target:  5'- uAGGCGgugGGgCugAGGGCguGCUCCGu -3'
miRNA:   3'- cUCCGUa--UUgGugUCCUGguCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 49011 0.66 0.933686
Target:  5'- -cGGCuaggAGCCGCAGGGCguuCUCCGg -3'
miRNA:   3'- cuCCGua--UUGGUGUCCUGgucGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 114204 0.73 0.582837
Target:  5'- aGAGGCucagguuguCCAgCAGGGCCAGCcCCAg -3'
miRNA:   3'- -CUCCGuauu-----GGU-GUCCUGGUCGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 161769 0.73 0.584893
Target:  5'- aGAGGCAacGCCcCgugGGaGACCGGCUCCAc -3'
miRNA:   3'- -CUCCGUauUGGuG---UC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 99133 0.71 0.708547
Target:  5'- cAGGCGUcuCCACAGGGgcuCCAGCgaCCGg -3'
miRNA:   3'- cUCCGUAuuGGUGUCCU---GGUCGa-GGU- -5'
28805 3' -55.2 NC_006146.1 + 13260 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 22494 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 106295 0.7 0.738575
Target:  5'- cGGGUGUGuccugacagGCCucaAGGGCCAGUUCCAg -3'
miRNA:   3'- cUCCGUAU---------UGGug-UCCUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 28650 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 19416 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 64565 0.77 0.352558
Target:  5'- uGGGCAggAAgCAgGGGGCCAGCUCCu -3'
miRNA:   3'- cUCCGUa-UUgGUgUCCUGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 75270 0.71 0.708547
Target:  5'- aGGGGCuuuUGACC-CAaGACCuGCUCCAu -3'
miRNA:   3'- -CUCCGu--AUUGGuGUcCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 162008 0.74 0.49455
Target:  5'- uAGGCAc--CCugGGaGACCGGCUCCAc -3'
miRNA:   3'- cUCCGUauuGGugUC-CUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 16338 0.71 0.708547
Target:  5'- aGGGGg--AACCAgGGGACCGGCgccCCAg -3'
miRNA:   3'- -CUCCguaUUGGUgUCCUGGUCGa--GGU- -5'
28805 3' -55.2 NC_006146.1 + 71178 0.7 0.728648
Target:  5'- uGGGUggugGUAGCCGguGGGCCAGUagaagUCCAg -3'
miRNA:   3'- cUCCG----UAUUGGUguCCUGGUCG-----AGGU- -5'
28805 3' -55.2 NC_006146.1 + 130533 0.7 0.767747
Target:  5'- cGGGCGgcGACCAgGGGGCCuuCUCCGc -3'
miRNA:   3'- cUCCGUa-UUGGUgUCCUGGucGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 102513 0.73 0.564407
Target:  5'- cAGGCAgcACCACGGGAgucaCCAGCaccgCCAc -3'
miRNA:   3'- cUCCGUauUGGUGUCCU----GGUCGa---GGU- -5'
28805 3' -55.2 NC_006146.1 + 108069 0.72 0.657295
Target:  5'- -cGGCcUGGCCACGGcGGCCagGGUUCCAu -3'
miRNA:   3'- cuCCGuAUUGGUGUC-CUGG--UCGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.