miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28805 3' -55.2 NC_006146.1 + 145815 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 86611 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 86577 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 86543 0.67 0.905281
Target:  5'- aGGGGCAgcugGGCUugAGGGgCAGCUg-- -3'
miRNA:   3'- -CUCCGUa---UUGGugUCCUgGUCGAggu -5'
28805 3' -55.2 NC_006146.1 + 11287 0.67 0.898872
Target:  5'- aAGGCGUGcCCcaGCAGcGCCAGUUCUAc -3'
miRNA:   3'- cUCCGUAUuGG--UGUCcUGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 158128 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 155049 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 151971 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 148893 0.67 0.898872
Target:  5'- cGGGUGUuggGACCugGuGGcgcccGCCGGCUCCAa -3'
miRNA:   3'- cUCCGUA---UUGGugU-CC-----UGGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 132898 0.67 0.905281
Target:  5'- cAGGUucacguGCCuCAGGAguUCAGCUCCAc -3'
miRNA:   3'- cUCCGuau---UGGuGUCCU--GGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 16946 0.67 0.905281
Target:  5'- cGAGGCAccguGCCcaACGGGAgCGGCgggCCu -3'
miRNA:   3'- -CUCCGUau--UGG--UGUCCUgGUCGa--GGu -5'
28805 3' -55.2 NC_006146.1 + 66832 0.66 0.917376
Target:  5'- uGGGCuuUGACCGaucGGACCcGCUCUAc -3'
miRNA:   3'- cUCCGu-AUUGGUgu-CCUGGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 9143 0.66 0.933686
Target:  5'- cGGGGCGUuGCCucuuuCGGGgacgGCgGGCUCCc -3'
miRNA:   3'- -CUCCGUAuUGGu----GUCC----UGgUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 49007 0.66 0.933686
Target:  5'- uGGGGCGUugcccAGCUugGGGACCugacGC-CCGa -3'
miRNA:   3'- -CUCCGUA-----UUGGugUCCUGGu---CGaGGU- -5'
28805 3' -55.2 NC_006146.1 + 91022 0.66 0.933686
Target:  5'- aGAGGCAUGcucACCACGa---CAGCUUCAu -3'
miRNA:   3'- -CUCCGUAU---UGGUGUccugGUCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 54575 0.66 0.933686
Target:  5'- uGGGCAUGAUCA-GGGACCucuguGcCUCCu -3'
miRNA:   3'- cUCCGUAUUGGUgUCCUGGu----C-GAGGu -5'
28805 3' -55.2 NC_006146.1 + 50182 0.66 0.933686
Target:  5'- uGGGgGUGAUCucccggauCAGGugCuGCUCCAg -3'
miRNA:   3'- cUCCgUAUUGGu-------GUCCugGuCGAGGU- -5'
28805 3' -55.2 NC_006146.1 + 104690 0.66 0.928495
Target:  5'- aGGGGCAgcugGGCCugGaucucgucgccuGGGUCAGCUCCu -3'
miRNA:   3'- -CUCCGUa---UUGGugU------------CCUGGUCGAGGu -5'
28805 3' -55.2 NC_006146.1 + 128762 0.66 0.927962
Target:  5'- cGAGGCcuucuucuggaguGUGGCCAgCAGGGCCgaAGCgugaucggCCAc -3'
miRNA:   3'- -CUCCG-------------UAUUGGU-GUCCUGG--UCGa-------GGU- -5'
28805 3' -55.2 NC_006146.1 + 76914 0.66 0.917376
Target:  5'- aGAGGU--GACCGCGGGGCU-GCagCCGg -3'
miRNA:   3'- -CUCCGuaUUGGUGUCCUGGuCGa-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.