Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28806 | 3' | -56.8 | NC_006146.1 | + | 104341 | 1.06 | 0.003257 |
Target: 5'- cUGCGCCGCCUGCGCCACAAGAUCAAAg -3' miRNA: 3'- -ACGCGGCGGACGCGGUGUUCUAGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 23735 | 0.79 | 0.218684 |
Target: 5'- gGCGCCgGUCUGCGCCGCcgccGGGUCAAc -3' miRNA: 3'- aCGCGG-CGGACGCGGUGu---UCUAGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 63435 | 0.76 | 0.328225 |
Target: 5'- aGCGCgGCCaUGCGCCACAAGcUgAAGa -3' miRNA: 3'- aCGCGgCGG-ACGCGGUGUUCuAgUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 104110 | 0.75 | 0.359268 |
Target: 5'- aUGCGCCGCCUGgGCC-CGguguccAGGUCGc- -3' miRNA: 3'- -ACGCGGCGGACgCGGuGU------UCUAGUuu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 157860 | 0.75 | 0.367342 |
Target: 5'- aGCGCCGCCuggaaaaguUGUGCCACAGGuagaggcUCGAGa -3' miRNA: 3'- aCGCGGCGG---------ACGCGGUGUUCu------AGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 125968 | 0.75 | 0.37554 |
Target: 5'- cGCGCC-CCUG-GCCACGAGAgguUCAAGa -3' miRNA: 3'- aCGCGGcGGACgCGGUGUUCU---AGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 102938 | 0.74 | 0.436276 |
Target: 5'- gUGgGCUGCCUGCGCagcaucUAUAGGGUCAAc -3' miRNA: 3'- -ACgCGGCGGACGCG------GUGUUCUAGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 56322 | 0.71 | 0.572317 |
Target: 5'- --gGCCGUagCUGCGCCGCGAGAagGAGg -3' miRNA: 3'- acgCGGCG--GACGCGGUGUUCUagUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 161265 | 0.71 | 0.582542 |
Target: 5'- cUGUGCCGCaUGCGCCugGgggagaccgAGGUCAc- -3' miRNA: 3'- -ACGCGGCGgACGCGGugU---------UCUAGUuu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 104191 | 0.71 | 0.592803 |
Target: 5'- aGgGCCGUCUGCGCCcccACGGGGccgCAAGc -3' miRNA: 3'- aCgCGGCGGACGCGG---UGUUCUa--GUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 54400 | 0.7 | 0.627867 |
Target: 5'- gGUGCCGCCUccucGCGCCGCuccuccgcgguggagAGGGUCu-- -3' miRNA: 3'- aCGCGGCGGA----CGCGGUG---------------UUCUAGuuu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 50309 | 0.7 | 0.634067 |
Target: 5'- gGCGCCGCC-GgGCCuuguCcAGGUCAAAc -3' miRNA: 3'- aCGCGGCGGaCgCGGu---GuUCUAGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 122028 | 0.7 | 0.644399 |
Target: 5'- gGCGCagGCCUgGCGCCugGAGGcCGAc -3' miRNA: 3'- aCGCGg-CGGA-CGCGGugUUCUaGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 96431 | 0.7 | 0.654721 |
Target: 5'- aGCGCCGCUcaaggccaucgUGgGCCAUggGggCAGGg -3' miRNA: 3'- aCGCGGCGG-----------ACgCGGUGuuCuaGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 98454 | 0.69 | 0.675302 |
Target: 5'- gGCGCCGCCcggGgGCCAgucucuGGGUCAGu -3' miRNA: 3'- aCGCGGCGGa--CgCGGUgu----UCUAGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 120977 | 0.69 | 0.675302 |
Target: 5'- cGCGCUG-CUGgGCCACAGGuuAUCGGc -3' miRNA: 3'- aCGCGGCgGACgCGGUGUUC--UAGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 24087 | 0.69 | 0.675302 |
Target: 5'- gGCGCgGCCU-CGCCugGgacgcGGGUCGAGg -3' miRNA: 3'- aCGCGgCGGAcGCGGugU-----UCUAGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 50147 | 0.69 | 0.695738 |
Target: 5'- gGCGCCGCCaGCGCUcgucgucCAGGAcCAGGg -3' miRNA: 3'- aCGCGGCGGaCGCGGu------GUUCUaGUUU- -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 11523 | 0.69 | 0.705879 |
Target: 5'- aGCGCgGCCUGCGagCugGcGGUCAGc -3' miRNA: 3'- aCGCGgCGGACGCg-GugUuCUAGUUu -5' |
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28806 | 3' | -56.8 | NC_006146.1 | + | 60014 | 0.69 | 0.715957 |
Target: 5'- cGCGgccccguccCCGCCUGCGCC-CGAGccCGAGa -3' miRNA: 3'- aCGC---------GGCGGACGCGGuGUUCuaGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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