miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 3' -56.8 NC_006146.1 + 3148 0.66 0.868542
Target:  5'- cGCGCCcacccggccCCUGCGCC-Cu-GAUCGAGc -3'
miRNA:   3'- aCGCGGc--------GGACGCGGuGuuCUAGUUU- -5'
28806 3' -56.8 NC_006146.1 + 150217 0.66 0.868542
Target:  5'- uUGCGCUugGCCa--GCCAgGAGGUCAGc -3'
miRNA:   3'- -ACGCGG--CGGacgCGGUgUUCUAGUUu -5'
28806 3' -56.8 NC_006146.1 + 38256 0.66 0.868542
Target:  5'- gGCGCCGUgUGUGCCugGAacAUCu-- -3'
miRNA:   3'- aCGCGGCGgACGCGGugUUc-UAGuuu -5'
28806 3' -56.8 NC_006146.1 + 159548 0.66 0.875926
Target:  5'- cGCGCagCGCCUGCGCCaggcccguguACAGcGUCu-- -3'
miRNA:   3'- aCGCG--GCGGACGCGG----------UGUUcUAGuuu -5'
28806 3' -56.8 NC_006146.1 + 56498 0.68 0.735884
Target:  5'- aGCGCgCGCagucGgGCCGCGGGGUCGu- -3'
miRNA:   3'- aCGCG-GCGga--CgCGGUGUUCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 108075 0.67 0.802236
Target:  5'- aUG-GCCaGCCUGgGCCACAGGcaCAAGa -3'
miRNA:   3'- -ACgCGG-CGGACgCGGUGUUCuaGUUU- -5'
28806 3' -56.8 NC_006146.1 + 121070 0.67 0.811159
Target:  5'- cUGaC-CCGCCUGCGgCACAcgugccAGAUCAu- -3'
miRNA:   3'- -AC-GcGGCGGACGCgGUGU------UCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 55554 0.66 0.836904
Target:  5'- cGCGCUGCCUGUGUaguuuccuGCGAGAa---- -3'
miRNA:   3'- aCGCGGCGGACGCGg-------UGUUCUaguuu -5'
28806 3' -56.8 NC_006146.1 + 57939 0.66 0.853131
Target:  5'- gGCGCCGCCaugGUGCUGCA---UCAc- -3'
miRNA:   3'- aCGCGGCGGa--CGCGGUGUucuAGUuu -5'
28806 3' -56.8 NC_006146.1 + 51574 0.67 0.783926
Target:  5'- gGCGCCGCCgggagGgGCC-CGGGGgagcCAGAg -3'
miRNA:   3'- aCGCGGCGGa----CgCGGuGUUCUa---GUUU- -5'
28806 3' -56.8 NC_006146.1 + 42446 0.68 0.765061
Target:  5'- cGCGCCGCCaGCaugGCgGCcGGGUCGu- -3'
miRNA:   3'- aCGCGGCGGaCG---CGgUGuUCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 40986 0.68 0.765061
Target:  5'- gGUGCCGCgCcgGCGCCcCAGGGcgCAGAg -3'
miRNA:   3'- aCGCGGCG-Ga-CGCGGuGUUCUa-GUUU- -5'
28806 3' -56.8 NC_006146.1 + 104110 0.75 0.359268
Target:  5'- aUGCGCCGCCUGgGCC-CGguguccAGGUCGc- -3'
miRNA:   3'- -ACGCGGCGGACgCGGuGU------UCUAGUuu -5'
28806 3' -56.8 NC_006146.1 + 125968 0.75 0.37554
Target:  5'- cGCGCC-CCUG-GCCACGAGAgguUCAAGa -3'
miRNA:   3'- aCGCGGcGGACgCGGUGUUCU---AGUUU- -5'
28806 3' -56.8 NC_006146.1 + 102938 0.74 0.436276
Target:  5'- gUGgGCUGCCUGCGCagcaucUAUAGGGUCAAc -3'
miRNA:   3'- -ACgCGGCGGACGCG------GUGUUCUAGUUu -5'
28806 3' -56.8 NC_006146.1 + 24087 0.69 0.675302
Target:  5'- gGCGCgGCCU-CGCCugGgacgcGGGUCGAGg -3'
miRNA:   3'- aCGCGgCGGAcGCGGugU-----UCUAGUUU- -5'
28806 3' -56.8 NC_006146.1 + 104341 1.06 0.003257
Target:  5'- cUGCGCCGCCUGCGCCACAAGAUCAAAg -3'
miRNA:   3'- -ACGCGGCGGACGCGGUGUUCUAGUUU- -5'
28806 3' -56.8 NC_006146.1 + 11523 0.69 0.705879
Target:  5'- aGCGCgGCCUGCGagCugGcGGUCAGc -3'
miRNA:   3'- aCGCGgCGGACGCg-GugUuCUAGUUu -5'
28806 3' -56.8 NC_006146.1 + 17555 0.68 0.755443
Target:  5'- -uUGCCuaugacucCCUGCGCCGCcAGAUCAAu -3'
miRNA:   3'- acGCGGc-------GGACGCGGUGuUCUAGUUu -5'
28806 3' -56.8 NC_006146.1 + 42371 0.68 0.759304
Target:  5'- cGCGCCGCCagggugggcgagggGCGCCcCAGGGcCAc- -3'
miRNA:   3'- aCGCGGCGGa-------------CGCGGuGUUCUaGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.