miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 5' -58.7 NC_006146.1 + 61414 0.67 0.788963
Target:  5'- uGGCCgCCCUcagGUUUcacGACAGUGGUGg-- -3'
miRNA:   3'- -CCGGgGGGA---CAAA---CUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 24036 0.67 0.788963
Target:  5'- cGUCCCCCUGgcggggUGAC-GCGGCc--- -3'
miRNA:   3'- cCGGGGGGACaa----ACUGuCGCCGcaca -5'
28806 5' -58.7 NC_006146.1 + 119315 0.67 0.788071
Target:  5'- uGGCCCCUCUGgcucccccgGGCcccucccGGCGGCGc-- -3'
miRNA:   3'- -CCGGGGGGACaaa------CUG-------UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 88997 0.67 0.779078
Target:  5'- aGGCUCCCCauaUGUUUGGCA-CGGagccugcCGUGg -3'
miRNA:   3'- -CCGGGGGG---ACAAACUGUcGCC-------GCACa -5'
28806 5' -58.7 NC_006146.1 + 19946 0.67 0.778172
Target:  5'- cGGCCUCCCUGggcagaucagGGcCGGgGGCGUc- -3'
miRNA:   3'- -CCGGGGGGACaaa-------CU-GUCgCCGCAca -5'
28806 5' -58.7 NC_006146.1 + 115921 0.67 0.770877
Target:  5'- cGGCCaCCCCggGUacgggGGCAGCGGUa--- -3'
miRNA:   3'- -CCGG-GGGGa-CAaa---CUGUCGCCGcaca -5'
28806 5' -58.7 NC_006146.1 + 167600 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 168532 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 169464 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 170395 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 68055 0.67 0.761653
Target:  5'- cGGCUgCCCUGgcUGccaACAGgGGgGUGg -3'
miRNA:   3'- -CCGGgGGGACaaAC---UGUCgCCgCACa -5'
28806 5' -58.7 NC_006146.1 + 99042 0.68 0.723749
Target:  5'- aGGCCCCCCaGggcc-CGGCGG-GUGUc -3'
miRNA:   3'- -CCGGGGGGaCaaacuGUCGCCgCACA- -5'
28806 5' -58.7 NC_006146.1 + 102844 0.68 0.723749
Target:  5'- -aCCCCCCUG-UUGGCAGCcagGGCa--- -3'
miRNA:   3'- ccGGGGGGACaAACUGUCG---CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 113695 0.68 0.714064
Target:  5'- cGGCCUccggCCCgGg--GACGGCGGCGg-- -3'
miRNA:   3'- -CCGGG----GGGaCaaaCUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 114335 0.68 0.714064
Target:  5'- cGGCCgCCCCUGacggaggugGACGGgGGCcUGg -3'
miRNA:   3'- -CCGG-GGGGACaaa------CUGUCgCCGcACa -5'
28806 5' -58.7 NC_006146.1 + 117859 0.68 0.712119
Target:  5'- cGCCCCCCUuaccucuCGGCGGCGg-- -3'
miRNA:   3'- cCGGGGGGAcaaacu-GUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 56829 0.68 0.704313
Target:  5'- uGGCCCCCgaGgcggccucUGGCGGCGGgGg-- -3'
miRNA:   3'- -CCGGGGGgaCaa------ACUGUCGCCgCaca -5'
28806 5' -58.7 NC_006146.1 + 106465 0.68 0.704313
Target:  5'- aGCCCCUCUGUcuccUGGCAGCGuacgccgcCGUGg -3'
miRNA:   3'- cCGGGGGGACAa---ACUGUCGCc-------GCACa -5'
28806 5' -58.7 NC_006146.1 + 94538 0.68 0.703334
Target:  5'- cGCCCUCUcGUggcggucUUGAgGGUGGCGUGg -3'
miRNA:   3'- cCGGGGGGaCA-------AACUgUCGCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 96212 0.68 0.703334
Target:  5'- aGCCCCCCUGUUcucuCAagaauuagccuguGCGuGCGUGUu -3'
miRNA:   3'- cCGGGGGGACAAacu-GU-------------CGC-CGCACA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.