miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28807 3' -61.4 NC_006146.1 + 168146 0.66 0.661715
Target:  5'- cGGGCUUGGgCCugCgaGGGCCggguaguaCCAaCCAa -3'
miRNA:   3'- -UUCGAACC-GGugGa-CCCGGa-------GGU-GGU- -5'
28807 3' -61.4 NC_006146.1 + 63142 0.66 0.661715
Target:  5'- -uGC-UGGCCAUCUccGCCUCgACCAu -3'
miRNA:   3'- uuCGaACCGGUGGAccCGGAGgUGGU- -5'
28807 3' -61.4 NC_006146.1 + 149977 0.66 0.661715
Target:  5'- gGGGCcagGGCCugcaggucgGCCggacucaGGGCCUCCACgAa -3'
miRNA:   3'- -UUCGaa-CCGG---------UGGa------CCCGGAGGUGgU- -5'
28807 3' -61.4 NC_006146.1 + 106184 0.66 0.661715
Target:  5'- -----cGGCCugCUgacacgggucccGGGCCUCCuGCCAg -3'
miRNA:   3'- uucgaaCCGGugGA------------CCCGGAGG-UGGU- -5'
28807 3' -61.4 NC_006146.1 + 62017 0.66 0.661715
Target:  5'- -cGC-UGGCCGCggcgCUcGGCCUCUGCCGc -3'
miRNA:   3'- uuCGaACCGGUG----GAcCCGGAGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 13985 0.66 0.661715
Target:  5'- cAGCgccGCCACCcaGGCCUCgGCCGg -3'
miRNA:   3'- uUCGaacCGGUGGacCCGGAGgUGGU- -5'
28807 3' -61.4 NC_006146.1 + 148841 0.66 0.655709
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccugucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG---------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 158076 0.66 0.655709
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccugucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG---------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 154997 0.66 0.655709
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccugucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG---------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 151919 0.66 0.655709
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccugucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG---------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 145763 0.66 0.655709
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccugucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG---------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 59079 0.66 0.651701
Target:  5'- cGAGCU---CUugCUGGGCCUCCcucGCCu -3'
miRNA:   3'- -UUCGAaccGGugGACCCGGAGG---UGGu -5'
28807 3' -61.4 NC_006146.1 + 43642 0.66 0.651701
Target:  5'- gGGGCgUGGCCGCCUggggagagGGGCC-CgGCUc -3'
miRNA:   3'- -UUCGaACCGGUGGA--------CCCGGaGgUGGu -5'
28807 3' -61.4 NC_006146.1 + 121156 0.66 0.651701
Target:  5'- cGAGCUgcuCUACCUGGGCa-CCGCCc -3'
miRNA:   3'- -UUCGAaccGGUGGACCCGgaGGUGGu -5'
28807 3' -61.4 NC_006146.1 + 33231 0.66 0.651701
Target:  5'- cAGCcgggUGGCCGCCggcGGGU--CCGCCGg -3'
miRNA:   3'- uUCGa---ACCGGUGGa--CCCGgaGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 142686 0.66 0.648693
Target:  5'- cGGGUccGGCCGCCggaGGGCUcuaacccgucucugUCCACUAg -3'
miRNA:   3'- -UUCGaaCCGGUGGa--CCCGG--------------AGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 156911 0.66 0.645685
Target:  5'- cAGCccGGCCgagGCCUGGGUggcggcgcugacgggCUCCGCUAc -3'
miRNA:   3'- uUCGaaCCGG---UGGACCCG---------------GAGGUGGU- -5'
28807 3' -61.4 NC_006146.1 + 75303 0.66 0.641672
Target:  5'- uAGCUUGGCCuuACUUacaGGCC-CCGCCc -3'
miRNA:   3'- uUCGAACCGG--UGGAc--CCGGaGGUGGu -5'
28807 3' -61.4 NC_006146.1 + 138542 0.66 0.6216
Target:  5'- gGGGCgaGGUCucuuaCUGGGaCCUCCugCAu -3'
miRNA:   3'- -UUCGaaCCGGug---GACCC-GGAGGugGU- -5'
28807 3' -61.4 NC_006146.1 + 117575 0.66 0.6216
Target:  5'- -cGC--GGCCGCC-GGGCCUCC-UCGg -3'
miRNA:   3'- uuCGaaCCGGUGGaCCCGGAGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.