miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28807 5' -60.6 NC_006146.1 + 49029 0.66 0.773625
Target:  5'- cGUUCUCcGGGGCGCGGccCGagaccgucGCGUCGu -3'
miRNA:   3'- -CGAGAGcCCCUGCGCCu-GC--------CGCAGUu -5'
28807 5' -60.6 NC_006146.1 + 14199 0.66 0.764588
Target:  5'- aGC-CUggaCGGGGAgGCGGugGcGCG-CAAc -3'
miRNA:   3'- -CGaGA---GCCCCUgCGCCugC-CGCaGUU- -5'
28807 5' -60.6 NC_006146.1 + 129369 0.66 0.764588
Target:  5'- aGC-CUCaGGaGGAgccCGCGGAUcccgGGCGUCAGc -3'
miRNA:   3'- -CGaGAG-CC-CCU---GCGCCUG----CCGCAGUU- -5'
28807 5' -60.6 NC_006146.1 + 101292 0.66 0.755442
Target:  5'- ----cCGGGGACGUGGGCcuGGaCGUCu- -3'
miRNA:   3'- cgagaGCCCCUGCGCCUG--CC-GCAGuu -5'
28807 5' -60.6 NC_006146.1 + 61283 0.66 0.745266
Target:  5'- uCUCaCGGGGGCcugucgcguguuuGCGGcgcGCGGCGUCc- -3'
miRNA:   3'- cGAGaGCCCCUG-------------CGCC---UGCCGCAGuu -5'
28807 5' -60.6 NC_006146.1 + 151676 0.66 0.736858
Target:  5'- -gUCUgGGGGACugaGGGCGGCGcCu- -3'
miRNA:   3'- cgAGAgCCCCUGcg-CCUGCCGCaGuu -5'
28807 5' -60.6 NC_006146.1 + 69355 0.66 0.717938
Target:  5'- -gUCUCGGaGAUGgGGACGuaGUCAGu -3'
miRNA:   3'- cgAGAGCCcCUGCgCCUGCcgCAGUU- -5'
28807 5' -60.6 NC_006146.1 + 2577 0.67 0.708373
Target:  5'- gGCUCU---GGACGUuuGGAgGGCGUCGAa -3'
miRNA:   3'- -CGAGAgccCCUGCG--CCUgCCGCAGUU- -5'
28807 5' -60.6 NC_006146.1 + 76404 0.67 0.689071
Target:  5'- ----cCGGGGGCGCcGACGGCGgCGu -3'
miRNA:   3'- cgagaGCCCCUGCGcCUGCCGCaGUu -5'
28807 5' -60.6 NC_006146.1 + 110883 0.67 0.679351
Target:  5'- gGCUCgggcgcaggCGGGGACG-GGGCcGCGUUg- -3'
miRNA:   3'- -CGAGa--------GCCCCUGCgCCUGcCGCAGuu -5'
28807 5' -60.6 NC_006146.1 + 45827 0.67 0.679351
Target:  5'- cGC-CUCGaagacGGaGACGgGGAUGGCGUCc- -3'
miRNA:   3'- -CGaGAGC-----CC-CUGCgCCUGCCGCAGuu -5'
28807 5' -60.6 NC_006146.1 + 54703 0.68 0.650007
Target:  5'- aGCUCgaGGGGACgGCGGGCccGG-GUCAGg -3'
miRNA:   3'- -CGAGagCCCCUG-CGCCUG--CCgCAGUU- -5'
28807 5' -60.6 NC_006146.1 + 41070 0.68 0.650007
Target:  5'- cGCUCggaCGGGGGCGUGG-CGG-GUgGg -3'
miRNA:   3'- -CGAGa--GCCCCUGCGCCuGCCgCAgUu -5'
28807 5' -60.6 NC_006146.1 + 55276 0.68 0.630367
Target:  5'- gGCUCgUGGGGcuCGCGGugGGCa---- -3'
miRNA:   3'- -CGAGaGCCCCu-GCGCCugCCGcaguu -5'
28807 5' -60.6 NC_006146.1 + 54593 0.68 0.620545
Target:  5'- cCUCUUGGGGAgaggacCGCGGG-GGCGcCAu -3'
miRNA:   3'- cGAGAGCCCCU------GCGCCUgCCGCaGUu -5'
28807 5' -60.6 NC_006146.1 + 4452 0.68 0.620545
Target:  5'- uGCUCUCGGGGcacgacgucaGCGaCGGGgGGCugGUUAc -3'
miRNA:   3'- -CGAGAGCCCC----------UGC-GCCUgCCG--CAGUu -5'
28807 5' -60.6 NC_006146.1 + 168546 0.69 0.591154
Target:  5'- gGC-CUCGGGGGCGgaGGGgGGgGUCc- -3'
miRNA:   3'- -CGaGAGCCCCUGCg-CCUgCCgCAGuu -5'
28807 5' -60.6 NC_006146.1 + 169478 0.69 0.591154
Target:  5'- gGC-CUCGGGGGCGgaGGGgGGgGUCc- -3'
miRNA:   3'- -CGaGAGCCCCUGCg-CCUgCCgCAGuu -5'
28807 5' -60.6 NC_006146.1 + 170409 0.69 0.591154
Target:  5'- gGC-CUCGGGGGCGgaGGGgGGgGUCc- -3'
miRNA:   3'- -CGaGAGCCCCUGCg-CCUgCCgCAGuu -5'
28807 5' -60.6 NC_006146.1 + 167614 0.69 0.591154
Target:  5'- gGC-CUCGGGGGCGgaGGGgGGgGUCc- -3'
miRNA:   3'- -CGaGAGCCCCUGCg-CCUgCCgCAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.