miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28808 3' -59.5 NC_006146.1 + 92485 0.66 0.802446
Target:  5'- --cGCGGUgGGAGGUC-CagaaGGGCCCAg -3'
miRNA:   3'- uguUGCCG-CCUCUAGaGga--CCCGGGU- -5'
28808 3' -59.5 NC_006146.1 + 115949 0.66 0.802446
Target:  5'- aGCGGCGGCGGcGGUCgccCCgcGGGCagaCGu -3'
miRNA:   3'- -UGUUGCCGCCuCUAGa--GGa-CCCGg--GU- -5'
28808 3' -59.5 NC_006146.1 + 61763 0.66 0.793694
Target:  5'- gGCAGCGGCcGAGGcCUCUgu-GCCCAa -3'
miRNA:   3'- -UGUUGCCGcCUCUaGAGGaccCGGGU- -5'
28808 3' -59.5 NC_006146.1 + 36125 0.66 0.793694
Target:  5'- ----gGGUGGGGGUUguggCCUGGGCaCUAc -3'
miRNA:   3'- uguugCCGCCUCUAGa---GGACCCG-GGU- -5'
28808 3' -59.5 NC_006146.1 + 68300 0.66 0.793694
Target:  5'- aACAAaacaGGCGGaAGccCUCCUcGGGCCgCGa -3'
miRNA:   3'- -UGUUg---CCGCC-UCuaGAGGA-CCCGG-GU- -5'
28808 3' -59.5 NC_006146.1 + 137857 0.66 0.784804
Target:  5'- -gGugGGUGGGcGUgUCCcGGGCCCc -3'
miRNA:   3'- ugUugCCGCCUcUAgAGGaCCCGGGu -5'
28808 3' -59.5 NC_006146.1 + 93934 0.66 0.784804
Target:  5'- gGCGGCGGCGGGGcuccgcUCUCCgu--CCCAg -3'
miRNA:   3'- -UGUUGCCGCCUCu-----AGAGGacccGGGU- -5'
28808 3' -59.5 NC_006146.1 + 41841 0.66 0.784804
Target:  5'- --cGCGGgGGcuGUCUgcgccggcgUCUGGGCCCAg -3'
miRNA:   3'- uguUGCCgCCucUAGA---------GGACCCGGGU- -5'
28808 3' -59.5 NC_006146.1 + 51904 0.66 0.781211
Target:  5'- uGCGuCGGCGGGGGcCUCCgaggcaccgacggGcGGCCCc -3'
miRNA:   3'- -UGUuGCCGCCUCUaGAGGa------------C-CCGGGu -5'
28808 3' -59.5 NC_006146.1 + 64215 0.66 0.775783
Target:  5'- aGCucCGGCaGGAGGcacaUCUgcgCCUGGGCCgGg -3'
miRNA:   3'- -UGuuGCCG-CCUCU----AGA---GGACCCGGgU- -5'
28808 3' -59.5 NC_006146.1 + 98932 0.66 0.775783
Target:  5'- -gAugGGCGGAGGUCggcgCCacgaaGCCCAg -3'
miRNA:   3'- ugUugCCGCCUCUAGa---GGacc--CGGGU- -5'
28808 3' -59.5 NC_006146.1 + 122494 0.66 0.77214
Target:  5'- gACGGCGGCGG-GGUCgagagaauggaggCCgcGGaGCCCGg -3'
miRNA:   3'- -UGUUGCCGCCuCUAGa------------GGa-CC-CGGGU- -5'
28808 3' -59.5 NC_006146.1 + 74899 0.66 0.76664
Target:  5'- uCAGCGGUcGAGAUC-CCaaGGCCCc -3'
miRNA:   3'- uGUUGCCGcCUCUAGaGGacCCGGGu -5'
28808 3' -59.5 NC_006146.1 + 108580 0.66 0.757384
Target:  5'- gGCGGCGGCGucucuGGcCUCgCUGGGCUCu -3'
miRNA:   3'- -UGUUGCCGCcu---CUaGAG-GACCCGGGu -5'
28808 3' -59.5 NC_006146.1 + 55031 0.66 0.757384
Target:  5'- -gGGCGGgaUGGGGGUCggggCCgGGGCCUg -3'
miRNA:   3'- ugUUGCC--GCCUCUAGa---GGaCCCGGGu -5'
28808 3' -59.5 NC_006146.1 + 40363 0.67 0.748023
Target:  5'- --uGCGGCGGAGAaggCccCCUGGucgccGCCCGg -3'
miRNA:   3'- uguUGCCGCCUCUa--Ga-GGACC-----CGGGU- -5'
28808 3' -59.5 NC_006146.1 + 119937 0.67 0.738566
Target:  5'- gGCAGCGGCgcugcugccGGAGGUCUCgguggGGGgUCAg -3'
miRNA:   3'- -UGUUGCCG---------CCUCUAGAGga---CCCgGGU- -5'
28808 3' -59.5 NC_006146.1 + 54496 0.67 0.738566
Target:  5'- uCGugGGaGGAGA-CUCCccaGGGCCCc -3'
miRNA:   3'- uGUugCCgCCUCUaGAGGa--CCCGGGu -5'
28808 3' -59.5 NC_006146.1 + 42930 0.67 0.738566
Target:  5'- aGCAGCGGCgccaagcuccGGAGGaCUCCcgcgacGaGGCCCAu -3'
miRNA:   3'- -UGUUGCCG----------CCUCUaGAGGa-----C-CCGGGU- -5'
28808 3' -59.5 NC_006146.1 + 61921 0.67 0.737615
Target:  5'- ---cCGGCGGgccaucaGGggCUCCaGGGCCCu -3'
miRNA:   3'- uguuGCCGCC-------UCuaGAGGaCCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.