miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28809 3' -54.1 NC_006146.1 + 112032 0.65 0.968795
Target:  5'- aGGCCUCCUUCaGCAGgaugaaggggcugCCggCCuugACGGCg -3'
miRNA:   3'- aCUGGAGGAAGaUGUCa------------GG--GG---UGUCG- -5'
28809 3' -54.1 NC_006146.1 + 140509 0.66 0.966938
Target:  5'- -cGCCaCCUg--GCGG-CCCUACAGCa -3'
miRNA:   3'- acUGGaGGAagaUGUCaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 4535 0.66 0.966938
Target:  5'- -cGCCUa-UUCUACu-UUCCCACAGCg -3'
miRNA:   3'- acUGGAggAAGAUGucAGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 64845 0.66 0.966938
Target:  5'- gGGCUgcaCCUUCUGCcaggcuccaAGUCCggaugggcggCCACGGCc -3'
miRNA:   3'- aCUGGa--GGAAGAUG---------UCAGG----------GGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 103028 0.66 0.966938
Target:  5'- aUGACCUCU---UGCAGggCCUCucauACAGCg -3'
miRNA:   3'- -ACUGGAGGaagAUGUCa-GGGG----UGUCG- -5'
28809 3' -54.1 NC_006146.1 + 168154 0.66 0.96367
Target:  5'- cGGCCUUCccccgUCUGC---UCCCGCGGCc -3'
miRNA:   3'- aCUGGAGGa----AGAUGucaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 167222 0.66 0.96367
Target:  5'- cGGCCUUCccccgUCUGC---UCCCGCGGCc -3'
miRNA:   3'- aCUGGAGGa----AGAUGucaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 152196 0.66 0.96367
Target:  5'- -uGCCUCCUcgaGCAG-CCCaACAGCg -3'
miRNA:   3'- acUGGAGGAagaUGUCaGGGgUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 169086 0.66 0.96367
Target:  5'- cGGCCUUCccccgUCUGC---UCCCGCGGCc -3'
miRNA:   3'- aCUGGAGGa----AGAUGucaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 170018 0.66 0.96367
Target:  5'- cGGCCUUCccccgUCUGC---UCCCGCGGCc -3'
miRNA:   3'- aCUGGAGGa----AGAUGucaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 46650 0.66 0.96367
Target:  5'- aGACguaCUCCcUgaGCAGUUCCC-CGGCg -3'
miRNA:   3'- aCUG---GAGGaAgaUGUCAGGGGuGUCG- -5'
28809 3' -54.1 NC_006146.1 + 105143 0.66 0.96367
Target:  5'- aGGCCUCC-UCUAacgAGaCCgCCGCAGg -3'
miRNA:   3'- aCUGGAGGaAGAUg--UCaGG-GGUGUCg -5'
28809 3' -54.1 NC_006146.1 + 31664 0.66 0.96367
Target:  5'- gGuuCUCC-UCUccaACAagCCCCACAGCa -3'
miRNA:   3'- aCugGAGGaAGA---UGUcaGGGGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 46679 0.66 0.963332
Target:  5'- uUGGCCUCCacgUCggACcaggAGUCCcaguaagagucggCCGCGGCg -3'
miRNA:   3'- -ACUGGAGGa--AGa-UG----UCAGG-------------GGUGUCG- -5'
28809 3' -54.1 NC_006146.1 + 91790 0.66 0.960184
Target:  5'- uUGAUUUCCUgcagCU-CAG-CCCCAucucCAGCg -3'
miRNA:   3'- -ACUGGAGGAa---GAuGUCaGGGGU----GUCG- -5'
28809 3' -54.1 NC_006146.1 + 68014 0.66 0.956473
Target:  5'- cGGCC-CCUg--GC-GUCCCCcuGCGGCu -3'
miRNA:   3'- aCUGGaGGAagaUGuCAGGGG--UGUCG- -5'
28809 3' -54.1 NC_006146.1 + 165955 0.66 0.956473
Target:  5'- gUGGCC-CCU-----GGUCCCCGgGGCa -3'
miRNA:   3'- -ACUGGaGGAagaugUCAGGGGUgUCG- -5'
28809 3' -54.1 NC_006146.1 + 58271 0.66 0.956473
Target:  5'- cUGACCUCCcagacggUCUGCuG-CUCCAC-GCc -3'
miRNA:   3'- -ACUGGAGGa------AGAUGuCaGGGGUGuCG- -5'
28809 3' -54.1 NC_006146.1 + 154083 0.66 0.952534
Target:  5'- cGGCuCUCCcgggCUGCcggGGUCCCUcCGGCc -3'
miRNA:   3'- aCUG-GAGGaa--GAUG---UCAGGGGuGUCG- -5'
28809 3' -54.1 NC_006146.1 + 157161 0.66 0.952534
Target:  5'- cGGCuCUCCcgggCUGCcggGGUCCCUcCGGCc -3'
miRNA:   3'- aCUG-GAGGaa--GAUG---UCAGGGGuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.