miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28809 5' -55.9 NC_006146.1 + 122620 0.66 0.944074
Target:  5'- gGGGCggaggaggCCGGGGCCCUCUUUcgcgccAGGacggcggcgGGGg -3'
miRNA:   3'- -CCCGg-------GGUCUUGGGAGAAA------UCCa--------CCC- -5'
28809 5' -55.9 NC_006146.1 + 167599 0.66 0.944074
Target:  5'- cGGGCCUCcccuGGGGgCCUCg--GGGgcggaGGGg -3'
miRNA:   3'- -CCCGGGG----UCUUgGGAGaaaUCCa----CCC- -5'
28809 5' -55.9 NC_006146.1 + 45850 0.66 0.944074
Target:  5'- uGGcGuCCCCcGAGCCCcUUUUGGGaccggugaUGGGg -3'
miRNA:   3'- -CC-C-GGGGuCUUGGGaGAAAUCC--------ACCC- -5'
28809 5' -55.9 NC_006146.1 + 44962 0.66 0.944074
Target:  5'- aGGCCCCGGGGgaCUCgaccgcGGUGGc -3'
miRNA:   3'- cCCGGGGUCUUggGAGaaau--CCACCc -5'
28809 5' -55.9 NC_006146.1 + 70840 0.66 0.944074
Target:  5'- cGGCCUCAucuuccAGCCCUCUUcccggcgcAGGUGGu -3'
miRNA:   3'- cCCGGGGUc-----UUGGGAGAAa-------UCCACCc -5'
28809 5' -55.9 NC_006146.1 + 151302 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 148224 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 145146 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 142068 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 12086 0.66 0.939538
Target:  5'- cGGGCCCCGGccguguGCCUgaacacgcucuUCUUcAGGcugcGGGa -3'
miRNA:   3'- -CCCGGGGUCu-----UGGG-----------AGAAaUCCa---CCC- -5'
28809 5' -55.9 NC_006146.1 + 154380 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 157458 0.66 0.939538
Target:  5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5'
28809 5' -55.9 NC_006146.1 + 79295 0.66 0.939537
Target:  5'- uGGG-CCUAGAGCCUgCUcUAGGccaGGGa -3'
miRNA:   3'- -CCCgGGGUCUUGGGaGAaAUCCa--CCC- -5'
28809 5' -55.9 NC_006146.1 + 141780 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 144858 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 147936 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 151014 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 157170 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 154092 0.66 0.937659
Target:  5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3'
miRNA:   3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5'
28809 5' -55.9 NC_006146.1 + 85778 0.66 0.936705
Target:  5'- cGGCcauCCCAGAgGCCCUucuucCUUUuaacgggaggaagaaAGGUGGGc -3'
miRNA:   3'- cCCG---GGGUCU-UGGGA-----GAAA---------------UCCACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.