Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28809 | 5' | -55.9 | NC_006146.1 | + | 122620 | 0.66 | 0.944074 |
Target: 5'- gGGGCggaggaggCCGGGGCCCUCUUUcgcgccAGGacggcggcgGGGg -3' miRNA: 3'- -CCCGg-------GGUCUUGGGAGAAA------UCCa--------CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 147936 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 144858 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 141780 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 114328 | 0.66 | 0.929772 |
Target: 5'- cGGCgCCCGGccGCCC-CUgacggAGGUGGa -3' miRNA: 3'- cCCG-GGGUCu-UGGGaGAaa---UCCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 135691 | 0.66 | 0.919079 |
Target: 5'- --cUCCCAGAGCCCUCUUcccucccUGGGa -3' miRNA: 3'- cccGGGGUCUUGGGAGAAaucc---ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 117008 | 0.66 | 0.919079 |
Target: 5'- cGGGCCCUGGAccugggcuacGCCCUaacgGGGgcgcugaGGGc -3' miRNA: 3'- -CCCGGGGUCU----------UGGGAgaaaUCCa------CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 62397 | 0.66 | 0.919079 |
Target: 5'- gGGGUaagguuaucgacUCCGGAACCC-C---GGGUGGGc -3' miRNA: 3'- -CCCG------------GGGUCUUGGGaGaaaUCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 162400 | 0.66 | 0.919079 |
Target: 5'- cGGGaCCCCGGuggGCCaggau--GGUGGGg -3' miRNA: 3'- -CCC-GGGGUCu--UGGgagaaauCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 151014 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 154092 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 157170 | 0.66 | 0.937659 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggccggccuGGUGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau------CCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 157458 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 70840 | 0.66 | 0.944074 |
Target: 5'- cGGCCUCAucuuccAGCCCUCUUcccggcgcAGGUGGu -3' miRNA: 3'- cCCGGGGUc-----UUGGGAGAAa-------UCCACCc -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 154380 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 151302 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 148224 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 145146 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 142068 | 0.66 | 0.939538 |
Target: 5'- cGGGCUgCCGGGGuCCCUCcggcuGGccUGGGa -3' miRNA: 3'- -CCCGG-GGUCUU-GGGAGaaau-CC--ACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 12086 | 0.66 | 0.939538 |
Target: 5'- cGGGCCCCGGccguguGCCUgaacacgcucuUCUUcAGGcugcGGGa -3' miRNA: 3'- -CCCGGGGUCu-----UGGG-----------AGAAaUCCa---CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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