miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28809 5' -55.9 NC_006146.1 + 101610 1.11 0.002507
Target:  5'- uGGGCCCCAGAACCCUCUUUAGGUGGGc -3'
miRNA:   3'- -CCCGGGGUCUUGGGAGAAAUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 34145 0.79 0.308481
Target:  5'- cGGGCcuCCCGGAGCCCcggCga-GGGUGGGg -3'
miRNA:   3'- -CCCG--GGGUCUUGGGa--GaaaUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 137976 0.77 0.368297
Target:  5'- cGGGCCUCccgGGGGCCCggCg--GGGUGGGg -3'
miRNA:   3'- -CCCGGGG---UCUUGGGa-GaaaUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 11011 0.77 0.376312
Target:  5'- aGGGCCCCGGccucgaGGCCCUCUgcgAGGagaccaGGGa -3'
miRNA:   3'- -CCCGGGGUC------UUGGGAGAaa-UCCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 41057 0.76 0.444505
Target:  5'- cGGCCCUGGGGgCCUCg--GGGUGGa -3'
miRNA:   3'- cCCGGGGUCUUgGGAGaaaUCCACCc -5'
28809 5' -55.9 NC_006146.1 + 169566 0.75 0.490476
Target:  5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGGUGGGg -3'
miRNA:   3'- -CCCG---GGGUCUUGGGa--Gaaa----UCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 167701 0.75 0.490476
Target:  5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGGUGGGg -3'
miRNA:   3'- -CCCG---GGGUCUUGGGa--Gaaa----UCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 64158 0.75 0.490476
Target:  5'- aGGGCCUCGGAgucuGCCaggCU--GGGUGGGg -3'
miRNA:   3'- -CCCGGGGUCU----UGGga-GAaaUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 168826 0.74 0.519096
Target:  5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3'
miRNA:   3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 169758 0.74 0.519096
Target:  5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3'
miRNA:   3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 167894 0.74 0.519096
Target:  5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3'
miRNA:   3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 159280 0.74 0.528784
Target:  5'- cGGGCCUCGGGGCCCUCgcagucGGcaaacaGGGg -3'
miRNA:   3'- -CCCGGGGUCUUGGGAGaaau--CCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 100695 0.74 0.528784
Target:  5'- cGGCCCuCGGcACCCggcgCUgcggGGGUGGGu -3'
miRNA:   3'- cCCGGG-GUCuUGGGa---GAaa--UCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 159894 0.74 0.538538
Target:  5'- aGGGCCucgaggCCGGGGCCCUCgaagaUGGG-GGGc -3'
miRNA:   3'- -CCCGG------GGUCUUGGGAGaa---AUCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 9842 0.74 0.568142
Target:  5'- cGGGCCCUAGGcucACCCUCUUccagUAGGa--- -3'
miRNA:   3'- -CCCGGGGUCU---UGGGAGAA----AUCCaccc -5'
28809 5' -55.9 NC_006146.1 + 168634 0.73 0.608193
Target:  5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGUGGGg -3'
miRNA:   3'- -CCCG---GGGUCUUGGGa--Gaaau---CCACCC- -5'
28809 5' -55.9 NC_006146.1 + 38974 0.72 0.668636
Target:  5'- uGGGCCCCcaGACUCUCgcagAGG-GGGc -3'
miRNA:   3'- -CCCGGGGucUUGGGAGaaa-UCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 2275 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5'
28809 5' -55.9 NC_006146.1 + 3207 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5'
28809 5' -55.9 NC_006146.1 + 1343 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.