miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28809 5' -55.9 NC_006146.1 + 170428 0.66 0.934771
Target:  5'- gGGGUCCCgcGGGGCCCggcgCgugccgGGGgacccgGGGg -3'
miRNA:   3'- -CCCGGGG--UCUUGGGa---Gaaa---UCCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 169497 0.66 0.934771
Target:  5'- gGGGUCCCgcGGGGCCCggcgCgugccgGGGgacccgGGGg -3'
miRNA:   3'- -CCCGGGG--UCUUGGGa---Gaaa---UCCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 131468 0.66 0.934771
Target:  5'- aGGGCCCaguGcACCC-----AGGUGGGu -3'
miRNA:   3'- -CCCGGGgu-CuUGGGagaaaUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 51854 0.66 0.934771
Target:  5'- gGGGCCuggCCcGAGCCCg----GGGaUGGGg -3'
miRNA:   3'- -CCCGG---GGuCUUGGGagaaaUCC-ACCC- -5'
28809 5' -55.9 NC_006146.1 + 168565 0.66 0.934771
Target:  5'- gGGGUCCCgcGGGGCCCggcgCgugccgGGGgacccgGGGg -3'
miRNA:   3'- -CCCGGGG--UCUUGGGa---Gaaa---UCCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 33915 0.66 0.929772
Target:  5'- -cGUCCUGGAGCuCCUCcguccGGUGGGu -3'
miRNA:   3'- ccCGGGGUCUUG-GGAGaaau-CCACCC- -5'
28809 5' -55.9 NC_006146.1 + 114328 0.66 0.929772
Target:  5'- cGGCgCCCGGccGCCC-CUgacggAGGUGGa -3'
miRNA:   3'- cCCG-GGGUCu-UGGGaGAaa---UCCACCc -5'
28809 5' -55.9 NC_006146.1 + 71104 0.66 0.925607
Target:  5'- aGGCCCauugcagcaCuagcauggagagauuGGAGCCCUCgggcuuaauugUGGGUGGGa -3'
miRNA:   3'- cCCGGG---------G---------------UCUUGGGAGaa---------AUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 105181 0.66 0.924542
Target:  5'- uGGGUCUUGGuugaggugacuACCCUCcugUAGGUGGa -3'
miRNA:   3'- -CCCGGGGUCu----------UGGGAGaa-AUCCACCc -5'
28809 5' -55.9 NC_006146.1 + 146650 0.66 0.924542
Target:  5'- uGGGUCCaugguCAGAaaacaACCCUCccgggcGGUGGGc -3'
miRNA:   3'- -CCCGGG-----GUCU-----UGGGAGaaau--CCACCC- -5'
28809 5' -55.9 NC_006146.1 + 158252 0.66 0.924542
Target:  5'- uGGCCCUuGAGCCaCUC---GGG-GGGa -3'
miRNA:   3'- cCCGGGGuCUUGG-GAGaaaUCCaCCC- -5'
28809 5' -55.9 NC_006146.1 + 127642 0.66 0.924542
Target:  5'- aGGCCgCCcuGugCCUCUc--GGUGGGc -3'
miRNA:   3'- cCCGG-GGucUugGGAGAaauCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 95281 0.66 0.924542
Target:  5'- cGGCUCUuGAACCCgaaggcgCUguagacGGUGGGg -3'
miRNA:   3'- cCCGGGGuCUUGGGa------GAaau---CCACCC- -5'
28809 5' -55.9 NC_006146.1 + 162400 0.66 0.919079
Target:  5'- cGGGaCCCCGGuggGCCaggau--GGUGGGg -3'
miRNA:   3'- -CCC-GGGGUCu--UGGgagaaauCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 135691 0.66 0.919079
Target:  5'- --cUCCCAGAGCCCUCUUcccucccUGGGa -3'
miRNA:   3'- cccGGGGUCUUGGGAGAAaucc---ACCC- -5'
28809 5' -55.9 NC_006146.1 + 62397 0.66 0.919079
Target:  5'- gGGGUaagguuaucgacUCCGGAACCC-C---GGGUGGGc -3'
miRNA:   3'- -CCCG------------GGGUCUUGGGaGaaaUCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 117008 0.66 0.919079
Target:  5'- cGGGCCCUGGAccugggcuacGCCCUaacgGGGgcgcugaGGGc -3'
miRNA:   3'- -CCCGGGGUCU----------UGGGAgaaaUCCa------CCC- -5'
28809 5' -55.9 NC_006146.1 + 75472 0.67 0.915691
Target:  5'- aGGCCCCAGAGauacCCCUacacacauccGGUGGc -3'
miRNA:   3'- cCCGGGGUCUU----GGGAgaaau-----CCACCc -5'
28809 5' -55.9 NC_006146.1 + 65938 0.67 0.913385
Target:  5'- gGGaGCCCCAGG--CCUUUUUGGGgaaGGu -3'
miRNA:   3'- -CC-CGGGGUCUugGGAGAAAUCCa--CCc -5'
28809 5' -55.9 NC_006146.1 + 45014 0.67 0.913385
Target:  5'- aGGCCCCAccguCCCUCg--AGaGUGaGGg -3'
miRNA:   3'- cCCGGGGUcuu-GGGAGaaaUC-CAC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.