miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28809 5' -55.9 NC_006146.1 + 1343 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5'
28809 5' -55.9 NC_006146.1 + 2059 0.69 0.836239
Target:  5'- aGGGCCCgAGAguugGCCCUCguc-GGcauucuauUGGGc -3'
miRNA:   3'- -CCCGGGgUCU----UGGGAGaaauCC--------ACCC- -5'
28809 5' -55.9 NC_006146.1 + 2275 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5'
28809 5' -55.9 NC_006146.1 + 3207 0.72 0.672648
Target:  5'- cGGGCCCCGGGGaagccccccgcucgcCCCUC---GGGUcgcGGGa -3'
miRNA:   3'- -CCCGGGGUCUU---------------GGGAGaaaUCCA---CCC- -5'
28809 5' -55.9 NC_006146.1 + 3736 0.72 0.678656
Target:  5'- gGGGCCgCGuGGCCCUUcagcccgGGGUGGGu -3'
miRNA:   3'- -CCCGGgGUcUUGGGAGaaa----UCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 8324 0.69 0.828025
Target:  5'- aGGGCCCCc-GACCCUCcgUGGcGcaaguacucccUGGGg -3'
miRNA:   3'- -CCCGGGGucUUGGGAGaaAUC-C-----------ACCC- -5'
28809 5' -55.9 NC_006146.1 + 9842 0.74 0.568142
Target:  5'- cGGGCCCUAGGcucACCCUCUUccagUAGGa--- -3'
miRNA:   3'- -CCCGGGGUCU---UGGGAGAA----AUCCaccc -5'
28809 5' -55.9 NC_006146.1 + 11011 0.77 0.376312
Target:  5'- aGGGCCCCGGccucgaGGCCCUCUgcgAGGagaccaGGGa -3'
miRNA:   3'- -CCCGGGGUC------UUGGGAGAaa-UCCa-----CCC- -5'
28809 5' -55.9 NC_006146.1 + 11803 0.67 0.897507
Target:  5'- aGGGgCUgGGGACCCUgcaggaggggaAGGUGGGa -3'
miRNA:   3'- -CCCgGGgUCUUGGGAgaaa-------UCCACCC- -5'
28809 5' -55.9 NC_006146.1 + 12086 0.66 0.939538
Target:  5'- cGGGCCCCGGccguguGCCUgaacacgcucuUCUUcAGGcugcGGGa -3'
miRNA:   3'- -CCCGGGGUCu-----UGGG-----------AGAAaUCCa---CCC- -5'
28809 5' -55.9 NC_006146.1 + 13277 0.68 0.844271
Target:  5'- cGGcGCCCCAGAGCCC-CUc-GGGUc-- -3'
miRNA:   3'- -CC-CGGGGUCUUGGGaGAaaUCCAccc -5'
28809 5' -55.9 NC_006146.1 + 13452 0.67 0.894929
Target:  5'- aGGGaCCCCGGcAGCCC-----GGGUGGc -3'
miRNA:   3'- -CCC-GGGGUC-UUGGGagaaaUCCACCc -5'
28809 5' -55.9 NC_006146.1 + 14367 0.71 0.728026
Target:  5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3'
miRNA:   3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5'
28809 5' -55.9 NC_006146.1 + 16355 0.68 0.844271
Target:  5'- cGGcGCCCCAGAGCCC-CUc-GGGUc-- -3'
miRNA:   3'- -CC-CGGGGUCUUGGGaGAaaUCCAccc -5'
28809 5' -55.9 NC_006146.1 + 16530 0.67 0.894929
Target:  5'- aGGGaCCCCGGcAGCCC-----GGGUGGc -3'
miRNA:   3'- -CCC-GGGGUC-UUGGGagaaaUCCACCc -5'
28809 5' -55.9 NC_006146.1 + 17445 0.71 0.728026
Target:  5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3'
miRNA:   3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5'
28809 5' -55.9 NC_006146.1 + 19433 0.68 0.844271
Target:  5'- cGGcGCCCCAGAGCCC-CUc-GGGUc-- -3'
miRNA:   3'- -CC-CGGGGUCUUGGGaGAaaUCCAccc -5'
28809 5' -55.9 NC_006146.1 + 19608 0.67 0.894929
Target:  5'- aGGGaCCCCGGcAGCCC-----GGGUGGc -3'
miRNA:   3'- -CCC-GGGGUC-UUGGGagaaaUCCACCc -5'
28809 5' -55.9 NC_006146.1 + 20523 0.71 0.728026
Target:  5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3'
miRNA:   3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5'
28809 5' -55.9 NC_006146.1 + 22511 0.68 0.844271
Target:  5'- cGGcGCCCCAGAGCCC-CUc-GGGUc-- -3'
miRNA:   3'- -CC-CGGGGUCUUGGGaGAaaUCCAccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.