Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28809 | 5' | -55.9 | NC_006146.1 | + | 34145 | 0.79 | 0.308481 |
Target: 5'- cGGGCcuCCCGGAGCCCcggCga-GGGUGGGg -3' miRNA: 3'- -CCCG--GGGUCUUGGGa--GaaaUCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 26679 | 0.71 | 0.728026 |
Target: 5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3' miRNA: 3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 58403 | 0.7 | 0.743453 |
Target: 5'- cGGCCCCuGGACCgcuauCUCUaugagcgcgccgGGGUGGGu -3' miRNA: 3'- cCCGGGGuCUUGG-----GAGAaa----------UCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 167599 | 0.66 | 0.944074 |
Target: 5'- cGGGCCUCcccuGGGGgCCUCg--GGGgcggaGGGg -3' miRNA: 3'- -CCCGGGG----UCUUgGGAGaaaUCCa----CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 167894 | 0.74 | 0.519096 |
Target: 5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3' miRNA: 3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 168826 | 0.74 | 0.519096 |
Target: 5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3' miRNA: 3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 159280 | 0.74 | 0.528784 |
Target: 5'- cGGGCCUCGGGGCCCUCgcagucGGcaaacaGGGg -3' miRNA: 3'- -CCCGGGGUCUUGGGAGaaau--CCa-----CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 159894 | 0.74 | 0.538538 |
Target: 5'- aGGGCCucgaggCCGGGGCCCUCgaagaUGGG-GGGc -3' miRNA: 3'- -CCCGG------GGUCUUGGGAGaa---AUCCaCCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 108976 | 0.72 | 0.678656 |
Target: 5'- aGGGCCCUGGAGCCC-CUgauGGcccgccGGGu -3' miRNA: 3'- -CCCGGGGUCUUGGGaGAaauCCa-----CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 23601 | 0.71 | 0.728026 |
Target: 5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3' miRNA: 3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 14367 | 0.71 | 0.728026 |
Target: 5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3' miRNA: 3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 38974 | 0.72 | 0.668636 |
Target: 5'- uGGGCCCCcaGACUCUCgcagAGG-GGGc -3' miRNA: 3'- -CCCGGGGucUUGGGAGaaa-UCCaCCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 137976 | 0.77 | 0.368297 |
Target: 5'- cGGGCCUCccgGGGGCCCggCg--GGGUGGGg -3' miRNA: 3'- -CCCGGGG---UCUUGGGa-GaaaUCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 17445 | 0.71 | 0.728026 |
Target: 5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3' miRNA: 3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 167701 | 0.75 | 0.490476 |
Target: 5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGGUGGGg -3' miRNA: 3'- -CCCG---GGGUCUUGGGa--Gaaa----UCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 168634 | 0.73 | 0.608193 |
Target: 5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGUGGGg -3' miRNA: 3'- -CCCG---GGGUCUUGGGa--Gaaau---CCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 20523 | 0.71 | 0.728026 |
Target: 5'- cGGGCCUguCAGAcaGCCCUgUcUAGGgccGGGa -3' miRNA: 3'- -CCCGGG--GUCU--UGGGAgAaAUCCa--CCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 134155 | 0.71 | 0.737694 |
Target: 5'- cGGCCUgCGGAACCCUaag-AGG-GGGg -3' miRNA: 3'- cCCGGG-GUCUUGGGAgaaaUCCaCCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 169566 | 0.75 | 0.490476 |
Target: 5'- gGGGCuucCCCGGGGCCCgagCgcgcgucGGGUGGGg -3' miRNA: 3'- -CCCG---GGGUCUUGGGa--Gaaa----UCCACCC- -5' |
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28809 | 5' | -55.9 | NC_006146.1 | + | 169758 | 0.74 | 0.519096 |
Target: 5'- cGGCCCgGGGACCCUCgc--GG-GGGc -3' miRNA: 3'- cCCGGGgUCUUGGGAGaaauCCaCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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