miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 3' -58.5 NC_001493.1 + 43918 0.67 0.765042
Target:  5'- cCACCA--ACGaACGGCCaucgCGGAGUCAu -3'
miRNA:   3'- aGUGGUccUGC-UGCUGGg---GCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 58840 0.66 0.818437
Target:  5'- gUCACCgcGGGACGGa-ACCCCuucGGuGUCGu -3'
miRNA:   3'- -AGUGG--UCCUGCUgcUGGGG---CCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 9609 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 27281 0.7 0.557949
Target:  5'- gUCACUcac-CGGCGugCCCGGGGUCGc -3'
miRNA:   3'- -AGUGGuccuGCUGCugGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 12896 0.65 0.824317
Target:  5'- cCACCagcuguugaccccgGGGACGG-GACCCCgGGAGg-- -3'
miRNA:   3'- aGUGG--------------UCCUGCUgCUGGGG-CCUCagu -5'
2881 3' -58.5 NC_001493.1 + 11146 0.69 0.617733
Target:  5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3'
miRNA:   3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 126701 0.69 0.617733
Target:  5'- -gACCAGGGCucGAUGACCCCcGAGgCGg -3'
miRNA:   3'- agUGGUCCUG--CUGCUGGGGcCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 125163 0.68 0.687816
Target:  5'- --gUCGGuGACGGCggguGACUCCGGGGUCGu -3'
miRNA:   3'- aguGGUC-CUGCUG----CUGGGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 54833 0.68 0.69475
Target:  5'- aUACCGGGuCGugGcagcgccaggcuguGCCCCGGGGa-- -3'
miRNA:   3'- aGUGGUCCuGCugC--------------UGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 53398 0.66 0.818437
Target:  5'- aUCACCGcGGugG-CGAUCCCgaccaucgcacGGAGUUc -3'
miRNA:   3'- -AGUGGU-CCugCuGCUGGGG-----------CCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 41515 0.66 0.809899
Target:  5'- gCGCCGuucuuuguaGCGGCGGCCCUGGAGg-- -3'
miRNA:   3'- aGUGGUcc-------UGCUGCUGGGGCCUCagu -5'
2881 3' -58.5 NC_001493.1 + 87966 0.66 0.801206
Target:  5'- gCGCCuGGAgCGAuCGAUcgagaCUCGGAGUCGa -3'
miRNA:   3'- aGUGGuCCU-GCU-GCUG-----GGGCCUCAGU- -5'
2881 3' -58.5 NC_001493.1 + 26136 0.66 0.801206
Target:  5'- aUCACUGGGACGGCGcggugccgagaACCaCCGGuGa-- -3'
miRNA:   3'- -AGUGGUCCUGCUGC-----------UGG-GGCCuCagu -5'
2881 3' -58.5 NC_001493.1 + 118386 0.66 0.792365
Target:  5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3'
miRNA:   3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 100294 0.66 0.783386
Target:  5'- gUUAUUucuGGAUuggagcacgGGCGGCCCCGGGGUUg -3'
miRNA:   3'- -AGUGGu--CCUG---------CUGCUGGGGCCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 2832 0.66 0.792365
Target:  5'- -gACUuGGcgacCGAUGACCCCGG-GUCGa -3'
miRNA:   3'- agUGGuCCu---GCUGCUGGGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 103718 0.67 0.774275
Target:  5'- cCAgCAGGACc-UGACCUCGGAG-CAg -3'
miRNA:   3'- aGUgGUCCUGcuGCUGGGGCCUCaGU- -5'
2881 3' -58.5 NC_001493.1 + 67435 0.67 0.773357
Target:  5'- aCGCCAuGGcagcucacuacucGCGGCGAUaCCCGG-GUCAu -3'
miRNA:   3'- aGUGGU-CC-------------UGCUGCUG-GGGCCuCAGU- -5'
2881 3' -58.5 NC_001493.1 + 24224 0.68 0.717346
Target:  5'- gUCACCGaguGGuuGGCGACCCU-GAGUCc -3'
miRNA:   3'- -AGUGGU---CCugCUGCUGGGGcCUCAGu -5'
2881 3' -58.5 NC_001493.1 + 72453 0.68 0.697715
Target:  5'- -aACCccGGGCuGCGAUCCCGG-GUCAg -3'
miRNA:   3'- agUGGu-CCUGcUGCUGGGGCCuCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.