Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2881 | 5' | -59.9 | NC_001493.1 | + | 10554 | 0.66 | 0.760221 |
Target: 5'- cCCGAaaaucucaauuuCUCGGAGGGUgCCCG-CUCGa- -3' miRNA: 3'- uGGCU------------GAGCCUCCUA-GGGCaGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 126109 | 0.66 | 0.760221 |
Target: 5'- cCCGAaaaucucaauuuCUCGGAGGGUgCCCG-CUCGa- -3' miRNA: 3'- uGGCU------------GAGCCUCCUA-GGGCaGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 13071 | 0.66 | 0.760221 |
Target: 5'- cUCGucCUCccGGGGUCCCGUCCCcgggGUCa -3' miRNA: 3'- uGGCu-GAGccUCCUAGGGCAGGG----CAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 128625 | 0.66 | 0.760221 |
Target: 5'- cUCGucCUCccGGGGUCCCGUCCCcgggGUCa -3' miRNA: 3'- uGGCu-GAGccUCCUAGGGCAGGG----CAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 58663 | 0.66 | 0.741499 |
Target: 5'- gUCGGCccgCGGgacgacaccgaaGGGGUUCCGUCCCG-Cg -3' miRNA: 3'- uGGCUGa--GCC------------UCCUAGGGCAGGGCaG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 67506 | 0.66 | 0.741499 |
Target: 5'- gACCGGaaCGGccGGGcgcuuaCCCGUCCCGUUc -3' miRNA: 3'- -UGGCUgaGCC--UCCua----GGGCAGGGCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 107814 | 0.66 | 0.731999 |
Target: 5'- cGCgGACaCGGGGGGUCCCc-CUCGUUu -3' miRNA: 3'- -UGgCUGaGCCUCCUAGGGcaGGGCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 87766 | 0.66 | 0.731999 |
Target: 5'- uACCGGCgCGGAcGGGUCUCuUCCgGUa -3' miRNA: 3'- -UGGCUGaGCCU-CCUAGGGcAGGgCAg -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 11308 | 0.67 | 0.703041 |
Target: 5'- uCCGcCUCGGGGGucaucgagCCCugGUCCCGg- -3' miRNA: 3'- uGGCuGAGCCUCCua------GGG--CAGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 126862 | 0.67 | 0.703041 |
Target: 5'- uCCGcCUCGGGGGucaucgagCCCugGUCCCGg- -3' miRNA: 3'- uGGCuGAGCCUCCua------GGG--CAGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 94691 | 0.67 | 0.693264 |
Target: 5'- cCCGAC-CGGGGGua--CGUCCCGg- -3' miRNA: 3'- uGGCUGaGCCUCCuaggGCAGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 80306 | 0.67 | 0.663677 |
Target: 5'- cUUGGCgagCgGGGGGAUCCCGUCCauggccaggGUCg -3' miRNA: 3'- uGGCUGa--G-CCUCCUAGGGCAGGg--------CAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 73367 | 0.67 | 0.663677 |
Target: 5'- --aGAUccaGGAGGcUCCCGUCCCGa- -3' miRNA: 3'- uggCUGag-CCUCCuAGGGCAGGGCag -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 81920 | 0.68 | 0.633872 |
Target: 5'- gACCGACUCGGAcuccCUCGUCgUGUCc -3' miRNA: 3'- -UGGCUGAGCCUccuaGGGCAGgGCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 95774 | 0.7 | 0.516324 |
Target: 5'- cACUGuACUCGGGGaGGUCCaccaCCCGUCu -3' miRNA: 3'- -UGGC-UGAGCCUC-CUAGGgca-GGGCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 22224 | 0.72 | 0.400137 |
Target: 5'- cUCGACcCGGAGGcUCCCGUUUgGUCu -3' miRNA: 3'- uGGCUGaGCCUCCuAGGGCAGGgCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 9748 | 1.09 | 0.001262 |
Target: 5'- cACCGACUCGGAGGAUCCCGUCCCGUCg -3' miRNA: 3'- -UGGCUGAGCCUCCUAGGGCAGGGCAG- -5' |
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2881 | 5' | -59.9 | NC_001493.1 | + | 125302 | 1.09 | 0.001262 |
Target: 5'- cACCGACUCGGAGGAUCCCGUCCCGUCg -3' miRNA: 3'- -UGGCUGAGCCUCCUAGGGCAGGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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