miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2881 5' -59.9 NC_001493.1 + 10554 0.66 0.760221
Target:  5'- cCCGAaaaucucaauuuCUCGGAGGGUgCCCG-CUCGa- -3'
miRNA:   3'- uGGCU------------GAGCCUCCUA-GGGCaGGGCag -5'
2881 5' -59.9 NC_001493.1 + 128625 0.66 0.760221
Target:  5'- cUCGucCUCccGGGGUCCCGUCCCcgggGUCa -3'
miRNA:   3'- uGGCu-GAGccUCCUAGGGCAGGG----CAG- -5'
2881 5' -59.9 NC_001493.1 + 13071 0.66 0.760221
Target:  5'- cUCGucCUCccGGGGUCCCGUCCCcgggGUCa -3'
miRNA:   3'- uGGCu-GAGccUCCUAGGGCAGGG----CAG- -5'
2881 5' -59.9 NC_001493.1 + 126109 0.66 0.760221
Target:  5'- cCCGAaaaucucaauuuCUCGGAGGGUgCCCG-CUCGa- -3'
miRNA:   3'- uGGCU------------GAGCCUCCUA-GGGCaGGGCag -5'
2881 5' -59.9 NC_001493.1 + 58663 0.66 0.741499
Target:  5'- gUCGGCccgCGGgacgacaccgaaGGGGUUCCGUCCCG-Cg -3'
miRNA:   3'- uGGCUGa--GCC------------UCCUAGGGCAGGGCaG- -5'
2881 5' -59.9 NC_001493.1 + 67506 0.66 0.741499
Target:  5'- gACCGGaaCGGccGGGcgcuuaCCCGUCCCGUUc -3'
miRNA:   3'- -UGGCUgaGCC--UCCua----GGGCAGGGCAG- -5'
2881 5' -59.9 NC_001493.1 + 107814 0.66 0.731999
Target:  5'- cGCgGACaCGGGGGGUCCCc-CUCGUUu -3'
miRNA:   3'- -UGgCUGaGCCUCCUAGGGcaGGGCAG- -5'
2881 5' -59.9 NC_001493.1 + 87766 0.66 0.731999
Target:  5'- uACCGGCgCGGAcGGGUCUCuUCCgGUa -3'
miRNA:   3'- -UGGCUGaGCCU-CCUAGGGcAGGgCAg -5'
2881 5' -59.9 NC_001493.1 + 11308 0.67 0.703041
Target:  5'- uCCGcCUCGGGGGucaucgagCCCugGUCCCGg- -3'
miRNA:   3'- uGGCuGAGCCUCCua------GGG--CAGGGCag -5'
2881 5' -59.9 NC_001493.1 + 126862 0.67 0.703041
Target:  5'- uCCGcCUCGGGGGucaucgagCCCugGUCCCGg- -3'
miRNA:   3'- uGGCuGAGCCUCCua------GGG--CAGGGCag -5'
2881 5' -59.9 NC_001493.1 + 94691 0.67 0.693264
Target:  5'- cCCGAC-CGGGGGua--CGUCCCGg- -3'
miRNA:   3'- uGGCUGaGCCUCCuaggGCAGGGCag -5'
2881 5' -59.9 NC_001493.1 + 80306 0.67 0.663677
Target:  5'- cUUGGCgagCgGGGGGAUCCCGUCCauggccaggGUCg -3'
miRNA:   3'- uGGCUGa--G-CCUCCUAGGGCAGGg--------CAG- -5'
2881 5' -59.9 NC_001493.1 + 73367 0.67 0.663677
Target:  5'- --aGAUccaGGAGGcUCCCGUCCCGa- -3'
miRNA:   3'- uggCUGag-CCUCCuAGGGCAGGGCag -5'
2881 5' -59.9 NC_001493.1 + 81920 0.68 0.633872
Target:  5'- gACCGACUCGGAcuccCUCGUCgUGUCc -3'
miRNA:   3'- -UGGCUGAGCCUccuaGGGCAGgGCAG- -5'
2881 5' -59.9 NC_001493.1 + 95774 0.7 0.516324
Target:  5'- cACUGuACUCGGGGaGGUCCaccaCCCGUCu -3'
miRNA:   3'- -UGGC-UGAGCCUC-CUAGGgca-GGGCAG- -5'
2881 5' -59.9 NC_001493.1 + 22224 0.72 0.400137
Target:  5'- cUCGACcCGGAGGcUCCCGUUUgGUCu -3'
miRNA:   3'- uGGCUGaGCCUCCuAGGGCAGGgCAG- -5'
2881 5' -59.9 NC_001493.1 + 9748 1.09 0.001262
Target:  5'- cACCGACUCGGAGGAUCCCGUCCCGUCg -3'
miRNA:   3'- -UGGCUGAGCCUCCUAGGGCAGGGCAG- -5'
2881 5' -59.9 NC_001493.1 + 125302 1.09 0.001262
Target:  5'- cACCGACUCGGAGGAUCCCGUCCCGUCg -3'
miRNA:   3'- -UGGCUGAGCCUCCUAGGGCAGGGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.