miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28810 5' -53.4 NC_006146.1 + 46735 0.66 0.967601
Target:  5'- gCGGGCGGAGGCcacgcuGGCcAGGGUCc--- -3'
miRNA:   3'- gGUCCGCUUCCG------CCGuUUCUAGucac -5'
28810 5' -53.4 NC_006146.1 + 37678 0.66 0.967601
Target:  5'- -gGGGCuGggGGCaacgaGGCAAGGAgcccaGGUGa -3'
miRNA:   3'- ggUCCG-CuuCCG-----CCGUUUCUag---UCAC- -5'
28810 5' -53.4 NC_006146.1 + 151399 0.66 0.967288
Target:  5'- gCAGGCGGGggauggcgcGGCGGCAgcuguaccagccaAAGGUCAc-- -3'
miRNA:   3'- gGUCCGCUU---------CCGCCGU-------------UUCUAGUcac -5'
28810 5' -53.4 NC_006146.1 + 79708 0.67 0.964368
Target:  5'- aCAGGC--AGGCGGgGGGGAaCAGg- -3'
miRNA:   3'- gGUCCGcuUCCGCCgUUUCUaGUCac -5'
28810 5' -53.4 NC_006146.1 + 150657 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 153734 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 161746 0.67 0.964367
Target:  5'- cCCGGGgGu-GGCGGCuGAGGUCcgAGg- -3'
miRNA:   3'- -GGUCCgCuuCCGCCGuUUCUAG--UCac -5'
28810 5' -53.4 NC_006146.1 + 147579 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 156812 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 144501 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 141423 0.67 0.964367
Target:  5'- aCGGGCcuGGGGUGGCcGGGGAggGGUGg -3'
miRNA:   3'- gGUCCGc-UUCCGCCG-UUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 51145 0.67 0.964367
Target:  5'- gCAGGUGAcgaaGCGGCAGAGGgcgccgCuGUGg -3'
miRNA:   3'- gGUCCGCUuc--CGCCGUUUCUa-----GuCAC- -5'
28810 5' -53.4 NC_006146.1 + 54231 0.67 0.964032
Target:  5'- -gGGGCGGgagcagagccucuGGGCGGCcccGGUCAGg- -3'
miRNA:   3'- ggUCCGCU-------------UCCGCCGuuuCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 68196 0.67 0.960914
Target:  5'- gCGGGCGca-GCGGCuccgGGAGGUCAGa- -3'
miRNA:   3'- gGUCCGCuucCGCCG----UUUCUAGUCac -5'
28810 5' -53.4 NC_006146.1 + 46240 0.67 0.957236
Target:  5'- gCCGGaGgGAGGGcCGGUGAAGcggCGGUGc -3'
miRNA:   3'- -GGUC-CgCUUCC-GCCGUUUCua-GUCAC- -5'
28810 5' -53.4 NC_006146.1 + 53835 0.67 0.953329
Target:  5'- gUCGGGCGAAGGUguGGUcccGGAGG-CGGUa -3'
miRNA:   3'- -GGUCCGCUUCCG--CCG---UUUCUaGUCAc -5'
28810 5' -53.4 NC_006146.1 + 43744 0.67 0.953329
Target:  5'- gUCGGGgGuugcGGCGGaCAGAGAggAGUGg -3'
miRNA:   3'- -GGUCCgCuu--CCGCC-GUUUCUagUCAC- -5'
28810 5' -53.4 NC_006146.1 + 100012 0.67 0.953329
Target:  5'- gCGGGCacgucgGGAGGCGGCGGGGuccgCGGc- -3'
miRNA:   3'- gGUCCG------CUUCCGCCGUUUCua--GUCac -5'
28810 5' -53.4 NC_006146.1 + 123027 0.67 0.953329
Target:  5'- aCCgAGGCcGAGGCGGCccAGGUcCGGg- -3'
miRNA:   3'- -GG-UCCGcUUCCGCCGuuUCUA-GUCac -5'
28810 5' -53.4 NC_006146.1 + 166115 0.67 0.950872
Target:  5'- cCCGGGCGcAGaaacucguacugcucGGUGGCAAAGGuggaccaggugcUCAGUa -3'
miRNA:   3'- -GGUCCGC-UU---------------CCGCCGUUUCU------------AGUCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.