miRNA display CGI


Results 41 - 60 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28811 5' -61.5 NC_006146.1 + 65195 0.66 0.707839
Target:  5'- aGCCcuAGGCGCuCuGGgGGCCC-UGGg -3'
miRNA:   3'- gCGGucUCUGUG-GuCCgCCGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 135186 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 135279 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 111121 0.66 0.707839
Target:  5'- uGCCGGGucGACACCcucaacccccAGGUGGCCgGgcGGc -3'
miRNA:   3'- gCGGUCU--CUGUGG----------UCCGCCGGgCa-CC- -5'
28811 5' -61.5 NC_006146.1 + 136301 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 122631 0.66 0.707839
Target:  5'- gGCCGGGGcccucuuucGCGCCAGGaCGGCggCGgGGg -3'
miRNA:   3'- gCGGUCUC---------UGUGGUCC-GCCGg-GCaCC- -5'
28811 5' -61.5 NC_006146.1 + 114987 0.66 0.707839
Target:  5'- gGCCGcGGACAUCaAGGCcauGGCC-GUGGa -3'
miRNA:   3'- gCGGUcUCUGUGG-UCCG---CCGGgCACC- -5'
28811 5' -61.5 NC_006146.1 + 137509 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 137601 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 137880 0.66 0.707839
Target:  5'- cCGCCccGGGcCGgCAGGgGGucCCCGUGGa -3'
miRNA:   3'- -GCGGu-CUCuGUgGUCCgCC--GGGCACC- -5'
28811 5' -61.5 NC_006146.1 + 137230 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136580 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136673 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136765 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136858 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 137044 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 137137 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 137323 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136115 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5'
28811 5' -61.5 NC_006146.1 + 136208 0.66 0.707839
Target:  5'- gGCCGGGG--GCCGGGUG-CCCcUGGg -3'
miRNA:   3'- gCGGUCUCugUGGUCCGCcGGGcACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.