miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 92878 0.66 0.789912
Target:  5'- cACGAGCCCagguaccugcuAgGCCACCAcCCCCc- -3'
miRNA:   3'- -UGUUCGGGau---------UgCGGUGGUcGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 102731 0.66 0.782585
Target:  5'- ---cGUCCUGACGCUgcGCCuGCCCgGGg -3'
miRNA:   3'- uguuCGGGAUUGCGG--UGGuCGGGgUU- -5'
28812 5' -58.6 NC_006146.1 + 51900 0.66 0.782585
Target:  5'- uUAAGCCCggUGACGCUuccuccccCCAGCUCCu- -3'
miRNA:   3'- uGUUCGGG--AUUGCGGu-------GGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 41776 0.66 0.782585
Target:  5'- -gAGGCCCU-GCGCC-CgGGCgCCCGc -3'
miRNA:   3'- ugUUCGGGAuUGCGGuGgUCG-GGGUu -5'
28812 5' -58.6 NC_006146.1 + 107651 0.66 0.782585
Target:  5'- -aGAGCCCcccgGAgGCCAUU-GCCCCAu -3'
miRNA:   3'- ugUUCGGGa---UUgCGGUGGuCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 81977 0.66 0.782585
Target:  5'- -gGAGCCUcAGCcucaGCCACaagAGCCCCAGu -3'
miRNA:   3'- ugUUCGGGaUUG----CGGUGg--UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 146788 0.66 0.782585
Target:  5'- uACAGGCCCgg-UGCCAgCcGCCCuCGAc -3'
miRNA:   3'- -UGUUCGGGauuGCGGUgGuCGGG-GUU- -5'
28812 5' -58.6 NC_006146.1 + 85236 0.66 0.779815
Target:  5'- uCAGGCCCUuucauccACcaggguccccguggGCCaACCAGCCCCu- -3'
miRNA:   3'- uGUUCGGGAu------UG--------------CGG-UGGUCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 106462 0.66 0.779815
Target:  5'- aAC-AGCCCcucUGucuccuggcagcguACGCCGCCguGGCCCCGg -3'
miRNA:   3'- -UGuUCGGG---AU--------------UGCGGUGG--UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 78814 0.66 0.773306
Target:  5'- aGCAgcAGCCCcaggccGgGCCGCCccccgcagcAGCCCCAGg -3'
miRNA:   3'- -UGU--UCGGGau----UgCGGUGG---------UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 146667 0.66 0.773306
Target:  5'- aACAA-CCCUcccgggcggugGGCgGCC-CCGGCCCCAAc -3'
miRNA:   3'- -UGUUcGGGA-----------UUG-CGGuGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 117556 0.66 0.773306
Target:  5'- cCAAGaCCUcACGCCGCCccgcGGCCgCCGGg -3'
miRNA:   3'- uGUUCgGGAuUGCGGUGG----UCGG-GGUU- -5'
28812 5' -58.6 NC_006146.1 + 62350 0.66 0.773306
Target:  5'- cCAAGCCCagccacuccAACGCCGCgccggagaGGCCCCu- -3'
miRNA:   3'- uGUUCGGGa--------UUGCGGUGg-------UCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 110112 0.66 0.773306
Target:  5'- cCAGGCCCUGGa-CCugguCCGGCuCCCAc -3'
miRNA:   3'- uGUUCGGGAUUgcGGu---GGUCG-GGGUu -5'
28812 5' -58.6 NC_006146.1 + 28010 0.66 0.772371
Target:  5'- cAC-AGCCCaGGCcagGCCACCuuagacccggccaGGCCCCAu -3'
miRNA:   3'- -UGuUCGGGaUUG---CGGUGG-------------UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 15699 0.66 0.772371
Target:  5'- cAC-AGCCCaGGCcagGCCACCuuagacccggccaGGCCCCAu -3'
miRNA:   3'- -UGuUCGGGaUUG---CGGUGG-------------UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 12620 0.66 0.772371
Target:  5'- cAC-AGCCCaGGCcagGCCACCuuagacccggccaGGCCCCAu -3'
miRNA:   3'- -UGuUCGGGaUUG---CGGUGG-------------UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 21855 0.66 0.772371
Target:  5'- cAC-AGCCCaGGCcagGCCACCuuagacccggccaGGCCCCAu -3'
miRNA:   3'- -UGuUCGGGaUUG---CGGUGG-------------UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 18777 0.66 0.772371
Target:  5'- cAC-AGCCCaGGCcagGCCACCuuagacccggccaGGCCCCAu -3'
miRNA:   3'- -UGuUCGGGaUUG---CGGUGG-------------UCGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 5151 0.66 0.767677
Target:  5'- ---cGCCCUgcgaGACGCCcugcugaaguuccugGCCAGgCCCGAg -3'
miRNA:   3'- uguuCGGGA----UUGCGG---------------UGGUCgGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.