miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28815 3' -52.7 NC_006146.1 + 86069 0.66 0.982149
Target:  5'- --uUugGCCGGUGcUGUcGG--AGCCACu -3'
miRNA:   3'- guuGugUGGCCAC-ACA-CCaaUCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 121134 0.66 0.980016
Target:  5'- aGACACaucaGCCGGcGUcUGGgccugGGCCGCg -3'
miRNA:   3'- gUUGUG----UGGCCaCAcACCaa---UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 161689 0.66 0.980016
Target:  5'- cUAAUugGCCGuGUGUGaUGGggAGCUc- -3'
miRNA:   3'- -GUUGugUGGC-CACAC-ACCaaUCGGug -5'
28815 3' -52.7 NC_006146.1 + 99621 0.66 0.980016
Target:  5'- aCAACugccCACgGGUG-GUGGaaacucAGCCACa -3'
miRNA:   3'- -GUUGu---GUGgCCACaCACCaa----UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 85383 0.66 0.977457
Target:  5'- cCAAUugACCacaagggGGcGUGUGGUcaagAGCCAUa -3'
miRNA:   3'- -GUUGugUGG-------CCaCACACCAa---UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 58227 0.66 0.97248
Target:  5'- -cGCACACCGGggGcGUGGacaagGGCUAUa -3'
miRNA:   3'- guUGUGUGGCCa-CaCACCaa---UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 2998 0.67 0.968954
Target:  5'- -cACGCGCCGGUGcccccgcgagGGUccccgGGCCGCc -3'
miRNA:   3'- guUGUGUGGCCACaca-------CCAa----UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 1134 0.67 0.968954
Target:  5'- -cACGCGCCGGUGcccccgcgagGGUccccgGGCCGCc -3'
miRNA:   3'- guUGUGUGGCCACaca-------CCAa----UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 2066 0.67 0.968954
Target:  5'- -cACGCGCCGGUGcccccgcgagGGUccccgGGCCGCc -3'
miRNA:   3'- guUGUGUGGCCACaca-------CCAa----UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 71164 0.67 0.96308
Target:  5'- cCGGCACugUGGcuUGgGUGGUggUAGCCGg -3'
miRNA:   3'- -GUUGUGugGCC--ACaCACCA--AUCGGUg -5'
28815 3' -52.7 NC_006146.1 + 137492 0.67 0.959502
Target:  5'- gCGGCGCAgCGGUGcccaGGcgGGCCACc -3'
miRNA:   3'- -GUUGUGUgGCCACaca-CCaaUCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 44689 0.68 0.938053
Target:  5'- gAugAUGCCGGUGUGgcGGcggUGGCCGu -3'
miRNA:   3'- gUugUGUGGCCACACa-CCa--AUCGGUg -5'
28815 3' -52.7 NC_006146.1 + 44076 0.69 0.92223
Target:  5'- -uGCAUGCCGGgacugGgGUGGUUccaccucgGGCCGCg -3'
miRNA:   3'- guUGUGUGGCCa----CaCACCAA--------UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 149820 0.69 0.92223
Target:  5'- aAACAgGcuCCGGgugGUGUGGgcGGCCAg -3'
miRNA:   3'- gUUGUgU--GGCCa--CACACCaaUCGGUg -5'
28815 3' -52.7 NC_006146.1 + 79609 0.69 0.901589
Target:  5'- aCAGCGCACCGGUGagcucgucccgGGgacagGGUCACa -3'
miRNA:   3'- -GUUGUGUGGCCACaca--------CCaa---UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 75759 0.7 0.883904
Target:  5'- uCAGguCGCCGGgcuucGGUUGGCCACa -3'
miRNA:   3'- -GUUguGUGGCCacacaCCAAUCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 100708 0.7 0.872233
Target:  5'- cCGGCGCugCGGggguggGUGUGGgaccggccucgccGGCCACc -3'
miRNA:   3'- -GUUGUGugGCCa-----CACACCaa-----------UCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 43280 0.71 0.845553
Target:  5'- gCAGCGgGCCGGcgGUGccgcccaGGUUAGUCACu -3'
miRNA:   3'- -GUUGUgUGGCCa-CACa------CCAAUCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 6377 0.71 0.820062
Target:  5'- aCAAUcaGCACCGGggcgGUGGaaAGCCACg -3'
miRNA:   3'- -GUUG--UGUGGCCaca-CACCaaUCGGUG- -5'
28815 3' -52.7 NC_006146.1 + 58427 0.73 0.764508
Target:  5'- gAGCGCGCCGGgGUG-GGUcugggGGUCACa -3'
miRNA:   3'- gUUGUGUGGCCaCACaCCAa----UCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.