miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28816 3' -58 NC_006146.1 + 48160 0.66 0.885349
Target:  5'- aCCCCucguagggGGcCUCCAGAUCCgUGUugaccgucgccgACUuGGCa -3'
miRNA:   3'- -GGGG--------CC-GAGGUCUAGG-ACA------------UGA-CCGg -5'
28816 3' -58 NC_006146.1 + 118077 0.66 0.885348
Target:  5'- gCUCGGCccUCCGcAUCCUGgGCacGGCCu -3'
miRNA:   3'- gGGGCCG--AGGUcUAGGACaUGa-CCGG- -5'
28816 3' -58 NC_006146.1 + 45220 0.66 0.881285
Target:  5'- cUCCCGGaCUCUGGAaCCggacggaggcuggggUGUugUcGGCCg -3'
miRNA:   3'- -GGGGCC-GAGGUCUaGG---------------ACAugA-CCGG- -5'
28816 3' -58 NC_006146.1 + 85302 0.66 0.878534
Target:  5'- gCCCCGGUgCCAGcuUCCgagGCgGGCg -3'
miRNA:   3'- -GGGGCCGaGGUCu-AGGacaUGaCCGg -5'
28816 3' -58 NC_006146.1 + 157793 0.66 0.878534
Target:  5'- cCCCCGuccacaaacaGggCCAGGUCCgaGUacuccuccgcGCUGGCCc -3'
miRNA:   3'- -GGGGC----------CgaGGUCUAGGa-CA----------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 107072 0.66 0.878534
Target:  5'- uCCCCGGCgCCacggcaAGA-CCUGgauaguCgUGGCCa -3'
miRNA:   3'- -GGGGCCGaGG------UCUaGGACau----G-ACCGG- -5'
28816 3' -58 NC_006146.1 + 92076 0.66 0.878534
Target:  5'- cCCCCGGaUCaCGGcugCCUGgacGCgugGGCCu -3'
miRNA:   3'- -GGGGCCgAG-GUCua-GGACa--UGa--CCGG- -5'
28816 3' -58 NC_006146.1 + 43250 0.66 0.878534
Target:  5'- gCCUCGGCgCCAGcgcggCCUGgacaagagGCagcgGGCCg -3'
miRNA:   3'- -GGGGCCGaGGUCua---GGACa-------UGa---CCGG- -5'
28816 3' -58 NC_006146.1 + 103988 0.66 0.878534
Target:  5'- aUCCCaGGCUCCcGGUCUgcaacCUGGUCc -3'
miRNA:   3'- -GGGG-CCGAGGuCUAGGacau-GACCGG- -5'
28816 3' -58 NC_006146.1 + 147437 0.66 0.878534
Target:  5'- aCCUGGCcacggCCAGggCCUcGUA--GGCCg -3'
miRNA:   3'- gGGGCCGa----GGUCuaGGA-CAUgaCCGG- -5'
28816 3' -58 NC_006146.1 + 131846 0.66 0.878534
Target:  5'- -gCCGGCgaccauucaCAGGgccCCUGccUGCUGGCCc -3'
miRNA:   3'- ggGGCCGag-------GUCUa--GGAC--AUGACCGG- -5'
28816 3' -58 NC_006146.1 + 22605 0.66 0.878534
Target:  5'- uCUCCGcGCUCCugcuGGAgcUCCUGUuCUGGgUg -3'
miRNA:   3'- -GGGGC-CGAGG----UCU--AGGACAuGACCgG- -5'
28816 3' -58 NC_006146.1 + 160038 0.66 0.878534
Target:  5'- uCCCCaugcaaGGCUUgAGAgccguauggCCUGcugGCUGGCUu -3'
miRNA:   3'- -GGGG------CCGAGgUCUa--------GGACa--UGACCGG- -5'
28816 3' -58 NC_006146.1 + 6751 0.66 0.878534
Target:  5'- aUCCGGCagauccaaUCCAGAUCagcuacuaugaCUGaGgUGGCCa -3'
miRNA:   3'- gGGGCCG--------AGGUCUAG-----------GACaUgACCGG- -5'
28816 3' -58 NC_006146.1 + 106180 0.66 0.872224
Target:  5'- uCCCCGGCcugcugacacgggucCCGGGccUCCUGccagGGCCu -3'
miRNA:   3'- -GGGGCCGa--------------GGUCU--AGGACaugaCCGG- -5'
28816 3' -58 NC_006146.1 + 156714 0.66 0.871513
Target:  5'- uCCCCguccaGGCUCCggGGGUCCagc-CUGGCg -3'
miRNA:   3'- -GGGG-----CCGAGG--UCUAGGacauGACCGg -5'
28816 3' -58 NC_006146.1 + 108732 0.66 0.871513
Target:  5'- gUuuGGCugUCCAG-UCCUGUGCa-GCCa -3'
miRNA:   3'- gGggCCG--AGGUCuAGGACAUGacCGG- -5'
28816 3' -58 NC_006146.1 + 33090 0.66 0.871513
Target:  5'- gCCCugCGGCUCUGGGgcagCCg--GgUGGCCg -3'
miRNA:   3'- -GGG--GCCGAGGUCUa---GGacaUgACCGG- -5'
28816 3' -58 NC_006146.1 + 102371 0.66 0.871513
Target:  5'- aCUCaaaGGuCUCCGGGUCCUcGgggaGCUGGUg -3'
miRNA:   3'- -GGGg--CC-GAGGUCUAGGA-Ca---UGACCGg -5'
28816 3' -58 NC_006146.1 + 22400 0.66 0.871513
Target:  5'- aCCCUGGCcCCgGGGUCCaccgugGUGacccaggUGGCCa -3'
miRNA:   3'- -GGGGCCGaGG-UCUAGGa-----CAUg------ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.